PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | NF-YB | ||||||||
Protein Properties | Length: 169aa MW: 18328.6 Da PI: 5.0433 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 129.9 | 8.6e-41 | 1 | 84 | 17 | 94 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtse......asdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 m+k++P+n+kiskdake++qecvsefisfvtse asdkcqrekrktingddllwa++tlGfedyveplk+yl+ yre + Aco005495.1 1 MRKAIPENGKISKDAKESIQECVSEFISFVTSEfgfwsrASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLQLYREGD 84 89*****************************987777779*****************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.04E-27 | 1 | 96 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.8E-37 | 1 | 96 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.7E-17 | 1 | 61 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.2E-16 | 19 | 37 | No hit | No description |
PRINTS | PR00615 | 3.2E-16 | 44 | 62 | No hit | No description |
PRINTS | PR00615 | 3.2E-16 | 63 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MRKAIPENGK ISKDAKESIQ ECVSEFISFV TSEFGFWSRA SDKCQREKRK TINGDDLLWA 60 MGTLGFEDYV EPLKLYLQLY REGDSKGSRP ADQSGKKEGV INGDPGASYI NVIHVDGELE 120 SASSGLSLKG NWSLEGLVFD TNQLGRMPAS SVGIPQCSVW GLGKASSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 1e-35 | 1 | 82 | 18 | 93 | NF-YB |
4awl_B | 1e-35 | 1 | 82 | 19 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 1e-35 | 1 | 82 | 19 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM662512 | 4e-50 | KM662512.1 Ananas bracteatus clone 46299b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020098726.1 | 8e-64 | LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | Q65XK1 | 6e-52 | NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | A0A199VJB1 | 6e-65 | A0A199VJB1_ANACO; Nuclear transcription factor Y subunit B-4 (Fragment) | ||||
STRING | XP_008791402.1 | 2e-57 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.7 | 7e-45 | nuclear factor Y, subunit B1 |
Link Out ? help Back to Top | |
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Phytozome | Aco005495.1 |
Publications ? help Back to Top | |||
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