PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003149.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 321aa    MW: 35510.7 Da    PI: 8.6012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003149.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12212257655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  s ae+L +Av+YIk+L+
  Aco003149.1 212 SIAERVRRTRISERMRKLQELVPNM----DKQTSTAEMLDLAVDYIKDLE 257
                  689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16209274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.22E-13210261No hitNo description
Gene3DG3DSA:4.10.280.104.3E-14211265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9212257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MYGSPQGAGT RKDLSGPFPP ASASEDSDLL LLHRHHEQQQ QMTSSGLLRY KSAPGALLGE  60
IGDDFFNPAA ESVLSDFWDN SSNRPGHSRG GGGGGCRTYN PVGFPNNNNS LDQNRSGPSP  120
SDLQAYQLVF SLSLNQSSFV RDLNGWFLHY LILQDQNVGV QKHQDFELAH QLSLPLTSSE  180
LAAAVDKFGR QFQDAVPCRI RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT  240
STAEMLDLAV DYIKDLEEKV KYVTAQRFSP RFRFAITQTP KRTSDGGFGL EPSGSFYVDL  300
EADWRGCRGV KSPLGFLGNK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6633340.0KM663334.1 Ananas bracteatus clone 47675c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089676.11e-145transcription factor bHLH122-like
TrEMBLA0A199W6W21e-158A0A199W6W2_ANACO; Transcription factor bHLH130
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-43bHLH family protein