PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002436.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YB
Protein Properties Length: 316aa    MW: 34717.2 Da    PI: 8.0683
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002436.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1741.6e-5434129297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dy+ep++ yl+kyre+eg++
  Aco002436.1  34 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSNLGFDDYAEPMRRYLQKYREMEGDR 129
                  89********************************************************************************************97 PP
2NF-YB140.54.4e-44188279495
        NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                  q ++lPianv+rimk++lP nakis+ aket+qec+sefi f+t+easd+c +ekrkting+d+++a+  lG+++y++ ++ yl+kyr  e+
  Aco002436.1 188 QGHLLPIANVGRIMKQALPPNAKISQRAKETMQECASEFINFITGEASDRCLKEKRKTINGEDICYAMKALGLDEYADVISRYLHKYRASEE 279
                  6689************************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5230142IPR009072Histone-fold
SuperFamilySSF471137.61E-4036143IPR009072Histone-fold
PfamPF008082.2E-2739103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-196785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-1986104No hitNo description
PRINTSPR006152.3E-19105123No hitNo description
Gene3DG3DSA:1.10.20.101.2E-42183287IPR009072Histone-fold
SuperFamilySSF471132.02E-33188287IPR009072Histone-fold
PfamPF008082.1E-25192255IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAESSSPDDS QGLHSNYKGA ATSSAGGTGE GGIKEQDRLL PIANVGRIMK QILPPNAKIS  60
KEAKETMQEC VSEFISFVTG EASDKCHKEK RKTVNGDDIC WALSNLGFDD YAEPMRRYLQ  120
KYREMEGDRA ASGSHSNKAS GSDARDQSPG SGHHFMFNAM GDGILLAKMD KNIVGAQNFS  180
REEHSDVQGH LLPIANVGRI MKQALPPNAK ISQRAKETMQ ECASEFINFI TGEASDRCLK  240
EKRKTINGED ICYAMKALGL DEYADVISRY LHKYRASEER ATSLKQKKGI QIDSHAKRPL  300
CELPMLIGRA VRLNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4333275192Transcription factor HapC (Eurofung)
4g92_B5e-4333275192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086005.11e-118nuclear transcription factor Y subunit B-1-like
SwissprotO822487e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0D9V9Y71e-113A0A0D9V9Y7_9ORYZ; Uncharacterized protein
STRINGLPERR01G37540.11e-113(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-58nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]