PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco002371.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | GRAS | ||||||||
Protein Properties | Length: 204aa MW: 20907.6 Da PI: 7.2153 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 83.4 | 4e-26 | 51 | 177 | 1 | 118 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaar.larsvselykalppsetseknsseelaal........klfsevsP 89 l++lLl+cA+ v++g le+a+alL ++s la p+gdpmqRla+ f+ ALa+r l+rs ++l ++l+ps+ ++ ss++ ++ + f+ ++P Aco002371.1 51 LIHLLLNCAHEVAAGALERASALLDHVSALAHPSGDPMQRLATSFADALARRaLLRSFPGLLRSLSPSAPPPPASSSSSSSSwpsstpalRHFFRLCP 148 689***********************************************994566*********888877666444444444555554477****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfd 118 +l ++ + N+a+ a+e+e+ vH++D+ Aco002371.1 149 FLPLAAALSNHAVAAAMESERVVHVVDLR 177 ***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.655 | 25 | 203 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-23 | 51 | 177 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MVQDDGSSSS SATSSSPLQS FSQMTLSPTA AGAGAGAWVG ELRSEERGLY LIHLLLNCAH 60 EVAAGALERA SALLDHVSAL AHPSGDPMQR LATSFADALA RRALLRSFPG LLRSLSPSAP 120 PPPASSSSSS SSWPSSTPAL RHFFRLCPFL PLAAALSNHA VAAAMESERV VHVVDLRAPS 180 DPAPAGDLLP SWRPGPAGPR TSG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020086271.1 | 2e-90 | LOW QUALITY PROTEIN: scarecrow-like protein 3 | ||||
TrEMBL | A0A199VXR5 | 8e-89 | A0A199VXR5_ANACO; DELLA protein GAI1 | ||||
STRING | XP_008776639.1 | 6e-52 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 2e-23 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Aco002371.1 |