PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco002370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 202aa MW: 22915.3 Da PI: 7.5053 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 208.6 | 3.5e-64 | 1 | 195 | 172 | 374 |
GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 l+vpf+f++l++ +l l+le+L++k+gEalaV + l+lh+ll++s sl+s +L +++l+Pkv+v++eqeadhn++++++rf+e+l++y+alfd Aco002370.1 1 LDVPFQFHPLLCPDLRRLDLESLKIKSGEALAVTSTLALHSLLSSSESLSS----FLYSLQRLRPKVLVLAEQEADHNGPTLVARFVESLNFYAALFD 94 68*****************************************99999998....******************************************* PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +le+ +pr+s er+ vEr llg+ei+n++ c g +r+erhe++ +W +rl++aGF+p++ s a++ll+ + +g ++ +++++l+++W+drpL Aco002370.1 95 CLESAAPRHSPERAAVERLLLGEEIRNIIVCDGPDRTERHEKFDRWARRLHAAGFSPLAPS----FPARRLLHDFRCHGCKLRHDDACLFICWQDRPL 188 *********************************************************9877....5689***************************** PP GRAS 368 vsvSaWr 374 +svSaW+ Aco002370.1 189 FSVSAWT 195 ******6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.2E-61 | 1 | 195 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 27.386 | 1 | 179 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
LDVPFQFHPL LCPDLRRLDL ESLKIKSGEA LAVTSTLALH SLLSSSESLS SFLYSLQRLR 60 PKVLVLAEQE ADHNGPTLVA RFVESLNFYA ALFDCLESAA PRHSPERAAV ERLLLGEEIR 120 NIIVCDGPDR TERHEKFDRW ARRLHAAGFS PLAPSFPARR LLHDFRCHGC KLRHDDACLF 180 ICWQDRPLFS VSAWTCRRLI D* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-32 | 1 | 197 | 186 | 381 | Protein SCARECROW |
5b3h_A | 3e-32 | 1 | 197 | 185 | 380 | Protein SCARECROW |
5b3h_D | 3e-32 | 1 | 197 | 185 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020086271.1 | 1e-142 | LOW QUALITY PROTEIN: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 7e-50 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A199VXR5 | 1e-141 | A0A199VXR5_ANACO; DELLA protein GAI1 | ||||
STRING | Lus10022418 | 2e-67 | (Linum usitatissimum) | ||||
STRING | GSMUA_Achr8P09690_001 | 2e-67 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50420.1 | 4e-50 | scarecrow-like 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco002370.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|