PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco001141.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 296aa MW: 33782.9 Da PI: 5.8854 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 8.8e-19 | 91 | 144 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe+ +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Aco001141.1 91 KKRRLNVEQVRTLEKSFEMGNKLEPERKMQLAKALGLKPRQIAIWFQNRRARWK 144 4568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.3 | 3.1e-41 | 90 | 181 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE+sFe+ +kLeperK++la++Lgl+prq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k+ene+L +++++L++e++ Aco001141.1 90 EKKRRLNVEQVRTLEKSFEMGNKLEPERKMQLAKALGLKPRQIAIWFQNRRARWKTKQLEKDYDELKRQFEAVKAENEMLLAQNNRLQAEIM 181 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.54E-19 | 84 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.41 | 86 | 146 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.8E-19 | 89 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.26E-16 | 91 | 147 | No hit | No description |
Pfam | PF00046 | 5.5E-16 | 91 | 144 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-19 | 93 | 153 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 117 | 126 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 121 | 144 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 126 | 142 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-14 | 146 | 186 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MFHNQMTCNN GFPSSFLPPN FILQDPHDDD PHHQPFNPLS PMLPTNPQEF RGLAANTMLG 60 KRPISLVGID ACEEMHIEEE LSDDGSQAGE KKRRLNVEQV RTLEKSFEMG NKLEPERKMQ 120 LAKALGLKPR QIAIWFQNRR ARWKTKQLEK DYDELKRQFE AVKAENEMLL AQNNRLQAEI 180 MGLKGREGSE PINLNKEKES SCSNRSENSP DINLDISRTT PPVNIGSPSN INENRLFLGP 240 NRSPNTTQFL PIPSKSETQC TNIQNGIQED NLCNMFSTMD DHPAFWTWSD HQSFH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 146 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020111205.1 | 0.0 | homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 2e-94 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A199V6G2 | 0.0 | A0A199V6G2_ANACO; Homeobox-leucine zipper protein ATHB-13 | ||||
STRING | XP_008804470.1 | 1e-133 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 3e-91 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco001141.1 |
Publications ? help Back to Top | |||
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