PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco000178.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 296aa MW: 33557.7 Da PI: 6.4371 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.3 | 2.2e-17 | 87 | 140 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LAk l+L+ rqV +WFqNrRa++k Aco000178.1 87 KKRRLNIEQVRTLEKNFELGNKLEPERKMQLAKALQLQPRQVAIWFQNRRARWK 140 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.9 | 8.5e-41 | 86 | 176 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqv++LE++Fe +kLeperK++la++L+lqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+en++L++++++L++e+ Aco000178.1 86 EKKRRLNIEQVRTLEKNFELGNKLEPERKMQLAKALQLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFEAIKSENDALQTQNKKLQAEI 176 69**************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 67 | 143 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-19 | 72 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 82 | 142 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-16 | 85 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.59E-14 | 87 | 143 | No hit | No description |
Pfam | PF00046 | 1.1E-14 | 87 | 140 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 117 | 140 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.3E-16 | 142 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MACNGMASSS SSFPPNFILQ IQTPHEDEHH HHHPPNPFNP LLPSNLQDFR GMVPMMGKRS 60 MSFHGMDAAG GAGEDELSDD CSQAGEKKRR LNIEQVRTLE KNFELGNKLE PERKMQLAKA 120 LQLQPRQVAI WFQNRRARWK TKQLEKDYDV LKRQFEAIKS ENDALQTQNK KLQAEILSLK 180 GRETSELINL NKETEGSCSN RSENSSEINL DISRTSAAIE SPLNPHQTLP FYPSMRPADI 240 NQLLQNPSQP PPPPPPENQC PKIEHVIADG NFSNLLCSME EQPPFWPWAD HNNFH* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 134 | 142 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020099478.1 | 0.0 | homeobox-leucine zipper protein HOX21-like | ||||
Swissprot | A2XD08 | 1e-104 | HOX21_ORYSI; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | A0A199W6I8 | 1e-178 | A0A199W6I8_ANACO; Homeobox-leucine zipper protein HOX21 | ||||
STRING | XP_008797128.1 | 1e-157 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69780.1 | 5e-83 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco000178.1 |