PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn391001
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family YABBY
Protein Properties Length: 73aa    MW: 7994.2 Da    PI: 9.341
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn391001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY27.69e-09124124
       YABBY  1 advfssseqvCyvqCnfCntilav 24
                +d++  +eq+Cyv+CnfCnt+la 
  Achn391001  1 MDLVPPPEQLCYVRCNFCNTVLAG 24
                578899****************85 PP
2YABBY31.75e-10347296134
       YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfik 134
                  ss++ s++++  +p++  v++PPek+ r Psayn+f+k
  Achn391001  34 SSSSSSSTSNEPMSPKASFVVKPPEKKHRLPSAYNQFMK 72 
                 2333336777888899999******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-5624IPR006780YABBY protein
PfamPF046907.0E-83672IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MDLVPPPEQL CYVRCNFCNT VLAGFVNEIK KGQSSSSSSS TSNEPMSPKA SFVVKPPEKK  60
HRLPSAYNQF MK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019460407.11e-24PREDICTED: protein CRABS CLAW isoform X1
RefseqXP_019460408.19e-25PREDICTED: protein CRABS CLAW isoform X2
TrEMBLA0A2R6QD862e-27A0A2R6QD86_ACTCH; Protein DROOPING LEAF like
STRINGXP_002512055.17e-23(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-07YABBY family protein