PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn390291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Dof
Protein Properties Length: 323aa    MW: 34423.6 Da    PI: 9.44
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn390291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.21.8e-3868128262
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                 +e alkcprC+st tkfCy+nny+l+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkks+
  Achn390291  68 PEVALKCPRCESTSTKFCYFNNYNLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSK 128
                 56789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3352121IPR003851Zinc finger, Dof-type
PfamPF027017.1E-3271126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.38572126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVFSSIPIYV DPRNWPQQEG GGSQNNQFPP PVLPPPAGGG GGSTGNGKGL VRPGSMVERA  60
RLAKVPQPEV ALKCPRCEST STKFCYFNNY NLTQPRHFCK TCRRYWTRGG ALRNVPVGGG  120
CRRNKKSKKS RSKSPAPPER QLVGSNSTST NMISHLLPLP LQLPFCPSLP HLSDYGGIGL  180
NFPGIQPPVA ASGGSGTDME FQIGGGSCSG GSVLSARFGD QWRLQQVNQF SFLAGMEPPP  240
SGAYQFEGEN VNSQAYTGEA TGELGSRELD SGVATVKVEE SKGLNLSRNF LGVQGNDQYW  300
GGNNNAWIDL SGFASSSTRH LL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133KKSRSKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028095928.11e-116dof zinc finger protein DOF3.6-like
TrEMBLA0A2R6RTK70.0A0A2R6RTK7_ACTCH; Dof zinc finger protein like
STRINGAquca_003_00022.11e-110(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.12e-42DNA binding with one finger 2.4