PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn389231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 317aa    MW: 34420.2 Da    PI: 9.7224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn389231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05153175223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  C+ Cg++F+  ++L+ H+ + H
  Achn389231 153 ACSECGEVFPKMESLELHQAVrH 175
                 6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.203152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280152175IPR007087Zinc finger, C2H2
SuperFamilySSF563995.37E-15177312No hitNo description
Gene3DG3DSA:3.90.228.106.5E-8239312IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKKCENEAKT QSKRRRKPQK QPSSWDQIKN LLSCKQIEGS KIHDPSKSNG GGYSKLGSCS  60
SICSFKDVVH GNTRVVHRAD NSPESSSVGQ KARLLSRKAA AGGGSMSAAS SRSLSGSARS  120
HGGMQLRKLS GCYECHVIVD PSRYPSPRSR ICACSECGEV FPKMESLELH QAVRHAVSEL  180
GPEDSGRNIV EIIFKSSWMK KDNPICQIER ILKVRHGFRG SASDGKGVRT MASSGRAHDC  240
LAGSDGRRAM LVCRVIAGRV RRMADDTPPE EDSVSHGLYD SVAGFAGVYS NLEELYVFNP  300
RAILPCFVVI YKALES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028069708.11e-144uncharacterized protein LOC114272245
TrEMBLA0A2R6QXQ70.0A0A2R6QXQ7_ACTCH; MAP1 light chain like isoform 1
STRINGXP_010268436.11e-129(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-86C2H2-like zinc finger protein