PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn387251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | Trihelix | ||||||||
Protein Properties | Length: 592aa MW: 66477.5 Da PI: 5.9007 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.2 | 1.5e-30 | 40 | 124 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k+++++keg++++ ++ +++++fdqlea Achn387251 40 RWPRQETLALLQIRSDMDAAFRDSSFKGPLWEEVSRKLSELGYHRSAKKCKEKFENVYKYHRRTKEGRISK--PDGKSYRFFDQLEA 124 8********************************************************************96..56667*******85 PP | |||||||
2 | trihelix | 98.9 | 4.3e-31 | 417 | 501 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev+aLi++r++m+ +++++ k+plWee s+ mr+ g+ r++k+Cke wen+nk++kk+ke+++kr +e+s+tcpyf++l+ Achn387251 417 RWPKEEVQALIRLRTNMDLKYQENGPKGPLWEEMSSEMRKIGYDRNAKRCKENWENINKYFKKVKESNRKR-PEDSKTCPYFHDLD 501 8*********************************************************************8.99**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.004 | 33 | 97 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0017 | 37 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 7.52E-24 | 39 | 104 | No hit | No description |
Pfam | PF13837 | 1.2E-19 | 39 | 125 | No hit | No description |
PROSITE profile | PS50090 | 7.306 | 410 | 474 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.3 | 414 | 476 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 415 | 473 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.5E-20 | 416 | 502 | No hit | No description |
CDD | cd12203 | 1.27E-26 | 416 | 481 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MLGTSGDGGA DGVELGGAGG FSEEDKVRIE EGDRNSAGNR WPRQETLALL QIRSDMDAAF 60 RDSSFKGPLW EEVSRKLSEL GYHRSAKKCK EKFENVYKYH RRTKEGRISK PDGKSYRFFD 120 QLEALENQAP PVPQLPPPPR PQTHPAMAAT PLTVAMPAAT TIPPIFSHLT VPSTTGPVSG 180 PQSTTIISTI SPQPPPPPPE TTIAATISAD PISFSFHAGI APSHLKMPVN VGSMSTSSSS 240 STSSDEEPER RRKRKRKWTD FFQRLMNKVV EKQEEMQKRF IESLERRERD RVAREEAWRA 300 QELVRMNREH DLLVHERSMA AAKDAAVIAF LQKVSEQQVP SAPPPQMQNN SQPPPPKSIP 360 LPHSQPELEI PQPQPPPLQQ QPQQPQPLVQ VQPPPKSPKT DNKGAENIMS SITSSSRWPK 420 EEVQALIRLR TNMDLKYQEN GPKGPLWEEM SSEMRKIGYD RNAKRCKENW ENINKYFKKV 480 KESNRKRPED SKTCPYFHDL DVLYREKAKN ETTNNLGSGF GVKMENPMAP IMVQPEQQWP 540 LPQQQPESAV EDDESDQNHE GDDEGDEEEE EEEVGGFEIV ANKPSSVGTV E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 250 | 255 | RRKRKR |
2 | 250 | 256 | RRKRKRK |
3 | 251 | 256 | RKRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061205 | 5e-34 | BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028117969.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A2R6R2L2 | 0.0 | A0A2R6R2L2_ACTCH; Trihelix transcription factor GT-2 like | ||||
STRING | XP_009618661.1 | 1e-176 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 7e-52 | Trihelix family protein |