PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn387251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 592aa    MW: 66477.5 Da    PI: 5.9007
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn387251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.21.5e-3040124187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k+++++keg++++  ++ +++++fdqlea
  Achn387251  40 RWPRQETLALLQIRSDMDAAFRDSSFKGPLWEEVSRKLSELGYHRSAKKCKEKFENVYKYHRRTKEGRISK--PDGKSYRFFDQLEA 124
                 8********************************************************************96..56667*******85 PP
2trihelix98.94.3e-31417501186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k+ev+aLi++r++m+ +++++  k+plWee s+ mr+ g+ r++k+Cke wen+nk++kk+ke+++kr +e+s+tcpyf++l+
  Achn387251 417 RWPKEEVQALIRLRTNMDLKYQENGPKGPLWEEMSSEMRKIGYDRNAKRCKENWENINKYFKKVKESNRKR-PEDSKTCPYFHDLD 501
                 8*********************************************************************8.99**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0043397IPR017877Myb-like domain
SMARTSM007170.00173799IPR001005SANT/Myb domain
CDDcd122037.52E-2439104No hitNo description
PfamPF138371.2E-1939125No hitNo description
PROSITE profilePS500907.306410474IPR017877Myb-like domain
SMARTSM007170.3414476IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-4415473IPR009057Homeodomain-like
PfamPF138371.5E-20416502No hitNo description
CDDcd122031.27E-26416481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MLGTSGDGGA DGVELGGAGG FSEEDKVRIE EGDRNSAGNR WPRQETLALL QIRSDMDAAF  60
RDSSFKGPLW EEVSRKLSEL GYHRSAKKCK EKFENVYKYH RRTKEGRISK PDGKSYRFFD  120
QLEALENQAP PVPQLPPPPR PQTHPAMAAT PLTVAMPAAT TIPPIFSHLT VPSTTGPVSG  180
PQSTTIISTI SPQPPPPPPE TTIAATISAD PISFSFHAGI APSHLKMPVN VGSMSTSSSS  240
STSSDEEPER RRKRKRKWTD FFQRLMNKVV EKQEEMQKRF IESLERRERD RVAREEAWRA  300
QELVRMNREH DLLVHERSMA AAKDAAVIAF LQKVSEQQVP SAPPPQMQNN SQPPPPKSIP  360
LPHSQPELEI PQPQPPPLQQ QPQQPQPLVQ VQPPPKSPKT DNKGAENIMS SITSSSRWPK  420
EEVQALIRLR TNMDLKYQEN GPKGPLWEEM SSEMRKIGYD RNAKRCKENW ENINKYFKKV  480
KESNRKRPED SKTCPYFHDL DVLYREKAKN ETTNNLGSGF GVKMENPMAP IMVQPEQQWP  540
LPQQQPESAV EDDESDQNHE GDDEGDEEEE EEEVGGFEIV ANKPSSVGTV E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255RRKRKR
2250256RRKRKRK
3251256RKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612055e-34BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117969.10.0trihelix transcription factor GT-2-like
TrEMBLA0A2R6R2L20.0A0A2R6R2L2_ACTCH; Trihelix transcription factor GT-2 like
STRINGXP_009618661.11e-176(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-52Trihelix family protein