PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn385341

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 382aa MW: 42084.3 Da PI: 9.2169

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn385341	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	8	28	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Achn385341 8 CEICGKGFQRDQNLQLHRRGH 28 *******************88 PP
2	zf-C2H2	16.1	3.1e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C k++ +s+ k+H++t+ Achn385341 82 WKCEKCEKRYAVQSDWKVHLKTC 104 58*******************98 PP
3	zf-C2H2	11.5	0.0009	112	130	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Achn385341 112 DCGTVFSRRDSFITHRAFC 130 8**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.1E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.59E-7	5	28	No hit	No description
SMART	SM00355	0.076	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.489	6	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.9E-5	70	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.59E-7	77	102	No hit	No description
SMART	SM00355	75	82	102	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EPRKRVYVCP ERTCVHHHPS 60 RALGDLTGIK KHFCRKHGEK KWKCEKCEKR YAVQSDWKVH LKTCGTREYK CDCGTVFSRR 120 DSFITHRAFC DALAEETARV AAAANMNNIS ISNNNISYHF IGTNPLGPAT PQHFSPIFKS 180 ISTVDQPIDP TNRRPSLWPH QSTLVHESVG SIGTVSSGSA YNDPIPCLNP SPSPSDQYQL 240 NWVFGNKNGT VPSLFSIQTP SAATSATALL QKAAQIGATS SDQAFLGSLG YKCNNNQGKD 300 GNKFCGLYGT NPEMSIHGSD LESSTVTDLS TINQFQMYPS KRQNIRSEDG GGGGQTRDFL 360 GVGNGIQVQP ICHPSSVNGW I*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EPRKRVYVCP ERTCVHHHPS  60
RALGDLTGIK KHFCRKHGEK KWKCEKCEKR YAVQSDWKVH LKTCGTREYK CDCGTVFSRR  120
DSFITHRAFC DALAEETARV AAAANMNNIS ISNNNISYHF IGTNPLGPAT PQHFSPIFKS  180
ISTVDQPIDP TNRRPSLWPH QSTLVHESVG SIGTVSSGSA YNDPIPCLNP SPSPSDQYQL  240
NWVFGNKNGT VPSLFSIQTP SAATSATALL QKAAQIGATS SDQAFLGSLG YKCNNNQGKD  300
GNKFCGLYGT NPEMSIHGSD LESSTVTDLS TINQFQMYPS KRQNIRSEDG GGGGQTRDFL  360
GVGNGIQVQP ICHPSSVNGW I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	78	147	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-35	78	147	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021282690.1	0.0	zinc finger protein MAGPIE
Refseq	XP_021282700.1	0.0	zinc finger protein MAGPIE
Swissprot	Q9ZWA6	1e-124	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A2R6QXG6	0.0	A0A2R6QXG6_ACTCH; Zinc finger protein like
STRING	EOX99537	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	7e-92	C2H2-like zinc finger protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]