PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn384901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 653aa MW: 72349.9 Da PI: 5.3372 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.6 | 2.8e-20 | 44 | 99 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+ee+e++F+++++p+ ++r+eL+++lgL+ q+k+WFqN+R+++k Achn384901 44 KKRYHRHTQHQIEEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 99 688999***********************************************998 PP | |||||||
2 | START | 181.8 | 3.8e-57 | 226 | 419 | 1 | 180 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 ela +a++el ++a+ +ep+W +n+de+ q+f+++ + +++ea+r+s+vv+m++++l e+l+d + qW+++++ +a+tlev+s+ Achn384901 226 ELAVAAMEELTQMAQMGEPLWIPGIdstYLLNEDEYFQIFPRGIGskplgFRSEASRESAVVIMNHTNLIEILMDAN-QWSTMFTgvvsRAMTLEVLST 323 57899****************9877656679***********999********************************.********************* PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 g galq+m+ae+ +lsp+vp R+++fvRy++q +g+w++vdvS+ds +++p +vR++++pSg+li++++ng+skvtw+ehv++++r++++ Achn384901 324 GvagnfnGALQVMTAEFHVLSPVVPtRESYFVRYCKQYVDGRWAVVDVSLDSLRPNP----LVRCRRRPSGCLIQELPNGYSKVTWIEHVEVDDRVISS 418 *********************************************************....6**********************************987 PP H CS START 180 l 180 + Achn384901 419 V 419 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 23 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-19 | 30 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 41 | 101 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-18 | 42 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.47E-19 | 44 | 99 | No hit | No description |
Pfam | PF00046 | 7.2E-18 | 44 | 99 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 76 | 99 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 35.287 | 217 | 427 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.14E-30 | 219 | 415 | No hit | No description |
CDD | cd08875 | 8.15E-106 | 221 | 419 | No hit | No description |
SMART | SM00234 | 3.8E-49 | 226 | 446 | IPR002913 | START domain |
Pfam | PF01852 | 1.9E-47 | 227 | 419 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.7E-5 | 286 | 413 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.23E-22 | 420 | 644 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MAHSSAECDV VGRVRDEEFD SKSGSENHEG GSGDEQDPYQ RPKKKRYHRH TQHQIEEMEA 60 FFKECPHPDD KQRKELSREL GLEPLQIKFW FQNKRTQMKM QHERHENTAL RNENEKLQSD 120 NMSYREALGN ASCPNCGDPT VLGEMSFDEQ HLRVENSRLR EEIDRISAIA AKYVGKPVAN 180 YPIVSPPITQ RSLEVENFGG ELYGAGDLLR SIGGPIEQAD KQMIVELAVA AMEELTQMAQ 240 MGEPLWIPGI DSTYLLNEDE YFQIFPRGIG SKPLGFRSEA SRESAVVIMN HTNLIEILMD 300 ANQWSTMFTG VVSRAMTLEV LSTGVAGNFN GALQVMTAEF HVLSPVVPTR ESYFVRYCKQ 360 YVDGRWAVVD VSLDSLRPNP LVRCRRRPSG CLIQELPNGY SKVTWIEHVE VDDRVISSVE 420 GKRSMLKLSE RMVMSFCEGV SASNAHTWTT LSGSGADDVR VMIRKSVDDP GRPPGIVLSA 480 ATSFWLPVPH KRVFEFFRDE HSRNEWDILS NGGMIQEMEH IAIGRETGHC VSLLRVNTVN 540 GNQNNMLILQ ESCTGQTGSY VIYAPVDIVA MNLVLGGGDP DYVPILPSGF SILPDGPNGE 600 GGSGGSLLTV AFQILVDSAP NAKLSLGSVA TVNNLIACSV ERIKAAVASK KS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028123594.1 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Refseq | XP_028123595.1 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Refseq | XP_028123596.1 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A2R6QTG6 | 0.0 | A0A2R6QTG6_ACTCH; Homeobox-leucine zipper protein | ||||
STRING | VIT_12s0059g02310.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |