PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn384071

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YA

Protein Properties

Length: 263aa MW: 28792.2 Da PI: 8.8654

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn384071	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.1	2.6e-32	167	223	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk+ +ksrkpylheSRh hAlrR+Rg+gGrF Achn384071 167 EEPVFVNAKQYHGILRRRQSRAKAESEKKI-AKSRKPYLHESRHLHALRRARGCGGRF 223 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.8E-36	165	226	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.292	166	226	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.1E-27	168	223	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.0E-23	169	191	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	171	191	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.0E-23	200	223	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MTHTVHTVQG NTRGANDRDA LLGKLPSLPP VFMFLDPAEG TTWRSSNDNP DNSEPDEPQV 60 QSSSPVSGMS HPGITTPDVQ YVAPQQLGPG NAMGHAAYPY PDPYYRSIFA PYDAQPYPAQ 120 PYPAQPMGST FLINQIIWSL TVELFQVHLQ LMGIQQAGVP LPSDAVEEPV FVNAKQYHGI 180 LRRRQSRAKA ESEKKIAKSR KPYLHESRHL HALRRARGCG GRFVNAKKTE NQQKEAAPGD 240 KSQANINLNG DKNNLATSES AS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	166	231	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM472177	6e-47	AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028114333.1	1e-105	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	2e-59	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2R6RG32	1e-135	A0A2R6RG32_ACTCH; Nuclear transcription factor Y subunit A-7 like
STRING	VIT_10s0003g04650.t01	1e-104	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-47	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]