PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn375621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 745aa MW: 81458.7 Da PI: 6.2155 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 6e-21 | 51 | 106 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Achn375621 51 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 106 688999***********************************************999 PP | |||||||
2 | START | 202.6 | 1.6e-63 | 247 | 471 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ela++a++elvk+a+ +ep+W++s e++n de+l++f++ + + +ea+r++gvv+ ++ lve+l+d++ +W e ++ + +t++ is Achn375621 247 ELALAAMEELVKMAQTNEPLWFRSFeggrEILNHDEYLRTFTPCIGlkpngFVTEASRETGVVIINSLALVETLMDSN-RWAEIFPcmiaRTTTTDEIS 344 5899**************************************99999***9***************************.**********9********* PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 +g galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + +++lpSg+++++++ng+skvtwveh++++++++h Achn375621 345 TGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDGIRETSGATTFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESIVH 443 ********************************************************999**************************************** PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 +++r+l++ g+ +ga++wvatlqrqce+ Achn375621 444 QIYRPLIGAGMGFGAQRWVATLQRQCEC 471 **************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-21 | 34 | 108 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 38 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 48 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-17 | 49 | 112 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.10E-18 | 50 | 108 | No hit | No description |
Pfam | PF00046 | 1.7E-18 | 51 | 106 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.794 | 238 | 474 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.4E-33 | 238 | 471 | No hit | No description |
CDD | cd08875 | 6.84E-126 | 242 | 470 | No hit | No description |
SMART | SM00234 | 2.4E-49 | 247 | 471 | IPR002913 | START domain |
Pfam | PF01852 | 3.6E-55 | 247 | 471 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.7E-24 | 499 | 669 | No hit | No description |
SuperFamily | SSF55961 | 1.7E-24 | 697 | 737 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence Send to blast |
MEGQGEATRI AENYEGNVGR RSREEHESRS GSDDGGGSGD DQDGDDKPPR KKRYHRHTPQ 60 QIQELESLFK ECPHPDEKQR LELSKRLCLE TRQVKFWFQN RRTQMKTQLE RHENSILRQE 120 NDKLRAENMS IREAMRNPIC TNCGGPAIIG DISLEEQQLR IENARLKDEL DRVCALAGKF 180 LGRPIPTMPN SSLELGVGSN GFGSMNAVAT TLPNLGPDFG VGISSGFPVV VAPSRATTGM 240 ERSMYLELAL AAMEELVKMA QTNEPLWFRS FEGGREILNH DEYLRTFTPC IGLKPNGFVT 300 EASRETGVVI INSLALVETL MDSNRWAEIF PCMIARTTTT DEISTGMGGT RNGALQLMHA 360 ELQVLSPLVP VREVNFLRFC KQHAEGVWAV VDVSIDGIRE TSGATTFLNC RRLPSGCVVQ 420 DMPNGYSKVT WVEHAEYDES IVHQIYRPLI GAGMGFGAQR WVATLQRQCE CLAILMSSTV 480 PSRDHTAITA SGRRSMLKLA QRMTDNFCAG VCASTVHKWN KLSATNVDED VRVMTRKSVD 540 DPGEPPGIVL SAATSVWLPV SPQRLFDFLR DERLRSEWDI LSNGGPMQEM AHIAKGQDHG 600 NCVSLLRASA MNANQSSMLI LQETCIDAAG SLVVYAPVDI PAMHVVMNGG DSAYVALLPS 660 GFAIVPDGPG SRGPMTSNGP ILANGPTRGG GPAHRVGGSL LTVAFQILVN SLPTAKLTVE 720 SVETVNNLIS CTVQKIKAAL QCEN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320755.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A2R6QS66 | 0.0 | A0A2R6QS66_ACTCH; Homeobox-leucine zipper protein like | ||||
STRING | POPTR_0014s07130.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1626 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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