PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn374931

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 258aa MW: 29302.7 Da PI: 8.1858

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn374931	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.8	4e-31	2	72	57	128
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ewyfF++rd+ky++g+r+nrat++gyWkatgkd+++++ +++++ +ktLvfy+grap g +tdWvmheyrl Achn374931 2 EWYFFCPRDRKYPNGSRTNRATRAGYWKATGKDRKIVC-QSAVTSYRKTLVFYRGRAPLGDRTDWVMHEYRL 72 8***********************************.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.097	1	95	IPR003441	NAC domain
SuperFamily	SSF101941	2.88E-35	2	95	IPR003441	NAC domain
Pfam	PF02365	3.9E-15	3	72	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEWYFFCPRD RKYPNGSRTN RATRAGYWKA TGKDRKIVCQ SAVTSYRKTL VFYRGRAPLG 60 DRTDWVMHEY RLSDDFSRGS PSFQGGFALC HVVKKNDQMQ KMSYVRGELK AKQVGKSSNN 120 GNFTSSRILS EPVTISEDTT FQAIVENESC LMGFDPSSPW VSPDLILDTS KECPQGQGVS 180 GYFPRYKFPN SVTQWQTYSH YEISPGSSYS NFSKEVELGD DPCRFSCTSP YFGLQTTWVF 240 GNEDMPCEGH DQTRPIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-29	2	101	72	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-29	2	101	72	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-29	2	101	72	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-29	2	101	72	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-29	2	101	75	174	NAC domain-containing protein 19
3swm_B	3e-29	2	101	75	174	NAC domain-containing protein 19
3swm_C	3e-29	2	101	75	174	NAC domain-containing protein 19
3swm_D	3e-29	2	101	75	174	NAC domain-containing protein 19
3swp_A	3e-29	2	101	75	174	NAC domain-containing protein 19
3swp_B	3e-29	2	101	75	174	NAC domain-containing protein 19
3swp_C	3e-29	2	101	75	174	NAC domain-containing protein 19
3swp_D	3e-29	2	101	75	174	NAC domain-containing protein 19
4dul_A	2e-29	2	101	72	171	NAC domain-containing protein 19
4dul_B	2e-29	2	101	72	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028083522.1	1e-119	NAC domain-containing protein 71-like
Refseq	XP_028089863.1	1e-119	NAC domain-containing protein 71-like
Swissprot	O49697	3e-54	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A2R6PIE1	0.0	A0A2R6PIE1_ACTCH; NAC domain-containing protein
STRING	cassava4.1_011029m	8e-99	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6256	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-56	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]