PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn359411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 436aa    MW: 48010.2 Da    PI: 9.081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn359411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-0582104123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F r  nL+ H r H
  Achn359411  82 FVCEICNKGFQRDQNLQLHRRGH 104
                 89*******************88 PP
2zf-C2H211.80.00076158180123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H +t+
  Achn359411 158 WKCDKCSKIYAVQSDWKAHSKTC 180
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.75E-781104No hitNo description
Gene3DG3DSA:3.30.160.601.4E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94982104IPR007087Zinc finger, C2H2
PfamPF121716.7E-582104IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01782104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-4146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.75E-7153178No hitNo description
SMARTSM00355180158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MSNNITCLSH EEASSDPLSG LNPMVSTISL PHDHQHPQKI KKKRNLPGNP VKILLLYVTE  60
FADPDAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRNSKENRK  120
RAYVCPEPSC VHHHPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKIYAVQ SDWKAHSKTC  180
GTREYRCDCG TLFSRKDSFV THRAFCDALA EESARLSANQ FGNTTITTTT TTNPTPHANF  240
NLHPPQNHHQ PPSLFPFQNP QQIHISLNHH PWDPPPQNPN PSLTQTPLPH HIKPETIHLP  300
LPPPPLSSSS FFQLSPNSAM SSHLSATALL QKAATVGAQS VGHMASTMTG VSPEYLGFAA  360
TWQKNDRLTR DFLGLTGDQC GGGGSGSGSG GGDANVNVRN MLTFTGGVEF PTTAYERDHT  420
LLKAQGFGFA EPPAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36154218367Zinc finger protein JACKDAW
5b3h_F6e-36154218367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028123052.10.0protein indeterminate-domain 12-like isoform X1
SwissprotO227591e-128IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A2R6PP340.0A0A2R6PP34_ACTCH; Protein indeterminate-domain like
STRINGXP_010087102.11e-169(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]