PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn358321
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 351aa    MW: 40615 Da    PI: 4.3082
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn358321genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-14113197286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 Wt+q +laL+e+  ++  +l+r++l+  +W+ev++k++e+   e + +qC+++++ l+k+ykk+k  ++   ++  s++++f+++e
  Achn358321 113 WTDQATLALLEVWGDRFLQLGRKSLRSEDWQEVAEKVSEGSKaEWTDTQCRNRLDTLKKKYKKEKSKMEAM-AGYNSKWVLFKKME 197
                 *************************************88765388***********************997.667779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.2E-20112198No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDDSEEDDRY RSAYNSSTRL KHSNRNRSYP INSNDRDDND EEEYEDDEFG EEDEGINHEF  60
NDQEDDEDEE DVENGYDESK RRQKKRKLGS LVSNYEFVPR NPPRGAQNSP SDWTDQATLA  120
LLEVWGDRFL QLGRKSLRSE DWQEVAEKVS EGSKAEWTDT QCRNRLDTLK KKYKKEKSKM  180
EAMAGYNSKW VLFKKMEMLL NWSNSLARQQ CGLPCGIDSG EYVFMNTRVY LDRSNGLDEM  240
RDSPGESESY EDDDEDSDGL SPKRRGVGGE ENDGSFGLLA DSIHKFGDIY EKIESSKRQQ  300
MMELVKMRMD FQRDLEVQKK QILDRAQAEI AKIRQGDDDE TDGSAENFSG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RRQKKRK
28087RRQKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122156.11e-153trihelix transcription factor ASIL2-like
TrEMBLA0A2R6QV230.0A0A2R6QV23_ACTCH; Trihelix transcription factor
STRINGVIT_11s0016g04130.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-71Trihelix family protein