PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn352831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 20166.4 Da PI: 5.5476 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 68 | 2.1e-21 | 7 | 74 | 1 | 64 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeee...redamsslvye 64 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp + +e+a+++ Achn352831 7 PCGACKFLRRKCVRGCVFAPYFCHEQgASHFAAIHKVFGASNVSKLLAHLPAQLaslKEQAARTFSTS 74 7*************************89**********************887532356676666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.443 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-20 | 7 | 76 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGASHFAAI HKVFGASNVS KLLAHLPAQL 60 ASLKEQAART FSTSANPSER FNGKFPNYPQ DVQSWFQCET SSTMPQLDLN ILSGNFGNNP 120 YFENGLLNPN SFPMIPEENA SFSSFEEASQ SMDSIDLRTN GQWPFQDDDN ELQSMAFGYV 180 QH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-18 | 3 | 57 | 7 | 60 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-18 | 3 | 57 | 7 | 60 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002263533.1 | 4e-73 | PREDICTED: LOB domain-containing protein 29 | ||||
TrEMBL | A0A2R6QSB5 | 1e-125 | A0A2R6QSB5_ACTCH; LOB domain-containing protein | ||||
STRING | VIT_07s0005g03020.t01 | 2e-72 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8446 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 5e-36 | LBD family protein |