PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn348381
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 667aa    MW: 73703.3 Da    PI: 5.5037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn348381genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14464510455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Achn348381 464 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 510
                 7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.2E-509197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625460509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18462526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-18464524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11464509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.64E-15464514No hitNo description
SMARTSM003531.7E-17466515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MAAPPSTRLQ GMLQTAVQSV QWTYSLFWQL CPQQGILVWG DGYYNGAIKT RKTVLPIEVS  60
AEEASLQRSQ QLRELYDSLS AGESNQQTRR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYAKRQ HVWLTGANEV DSKVFSRAIL AKVSVHNNSS MHNYCVCIPL LDGVVELGNT  180
ERVQEDIGFI HQVKSFFIDH HPPPPPKPAL SEHSTSNMAT SSVHPQQEQE EDEDEDDDDD  240
DEEEAESDSE AHTGLNSEAQ NPRVDHVARA AAEPSELMQL EMSEDIRLGS PDDGSNNMDP  300
DFQLMVASQG GNPADQQQRV DSFRAESTRR WPLLQDPLGR SLQAPTSGGT GLEELTQDDT  360
HYSQTVSTIL QHQSNRWLES SSSSAAGCLM YSSQSSFSKW PLRPSDHHHQ ADATSQCLLK  420
YILFTVPFLH SKYRDDNNSP KSATAADSAS RFRKPTPQDE LSANHVLAER RRREKLNERF  480
IILRSLVPFV TKMDKASILG DTIEYVKQLR KNIQDLEARA RQIEIDQRSR SSGDPQRSGA  540
KAATDKRKLR IVEASGGAKG KAVDSVAVAT PPPPAPPQPV AGVGVQVQVS IIESDALVEL  600
QCTHREGLLL DVMVVLRDHR VEVTAVQSSL TNGVFVAELR AKVKENVNGK KPSIVEVKRA  660
IHQIIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-21819712192Transcription factor MYC3
4rqw_B5e-21819712192Transcription factor MYC3
4rs9_A5e-21819712192Transcription factor MYC3
4yz6_A5e-21819712192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1468473ERRRRE
2469474RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028086976.10.0LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2R6QE260.0A0A2R6QE26_ACTCH; Basic helix-loop-helix protein like
STRINGVIT_07s0104g00090.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-96bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]