PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn344701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 38000.3 Da PI: 7.8378 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.7 | 7.1e-47 | 39 | 161 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104 FhPtdeel+ +yLkkkv++ +++l ++i+++d+yk++Pw+Lp+k+ +++ew+fF++rd+ky++g r+nr++ gyWkatg+dk++l++ + + +g+kk Achn344701 39 FHPTDEELIFHYLKKKVSSPSTPLVSIIADIDLYKFNPWELPAKALFGDNEWFFFTPRDRKYPNGARPNRMAGVGYWKATGTDKPILCSgGLQCIGVKK 137 9***********************999***************888889****************************************945566***** PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 Lvfykgr pkg ktdWvmheyrl Achn344701 138 ALVFYKGRPPKGLKTDWVMHEYRL 161 **********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.301 | 33 | 188 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-54 | 39 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-23 | 39 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MVMIGAEVIV EDCKISVLQY KISLSIVKIL SDEGSDRWFH PTDEELIFHY LKKKVSSPST 60 PLVSIIADID LYKFNPWELP AKALFGDNEW FFFTPRDRKY PNGARPNRMA GVGYWKATGT 120 DKPILCSGGL QCIGVKKALV FYKGRPPKGL KTDWVMHEYR LLDDSSTLPR LRGSMRLDDW 180 VLCLVRLKNN TLHQIAPPQE DHSGFSFVPR LNSSHSNGGQ IEHSLNSPKQ SFVLDDHQQA 240 RKYFNFRGGP SASSSTDTSS YSHEETVRPN HENTIKPLKR TLSVVSFGED IPFSPIKSLH 300 SISYPNLMED TIIFQICYLA DCVSSPSTAG YSDCSPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-60 | 39 | 194 | 23 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-60 | 39 | 194 | 23 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-60 | 39 | 194 | 23 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-60 | 39 | 194 | 23 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-60 | 39 | 194 | 26 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-60 | 39 | 194 | 26 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-60 | 39 | 194 | 26 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-60 | 39 | 194 | 26 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-60 | 39 | 194 | 26 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-60 | 39 | 194 | 26 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-60 | 39 | 194 | 26 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-60 | 39 | 194 | 26 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-60 | 39 | 194 | 23 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-60 | 39 | 194 | 23 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028107486.1 | 1e-125 | NAC domain-containing protein 72-like | ||||
Swissprot | Q9LD44 | 3e-72 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A2R6PY00 | 0.0 | A0A2R6PY00_ACTCH; NAC transcription factor | ||||
STRING | POPTR_0004s04920.1 | 1e-89 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 2e-73 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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