PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn341241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 253aa MW: 28844 Da PI: 5.2562 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 172.7 | 4e-54 | 94 | 190 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdrf+Pianv+rim+k+lP +akis+d+ket+qecvsefisf+t+ea+d+cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yre+eg++ Achn341241 94 VREQDRFMPIANVIRIMRKILPPHAKISDDSKETIQECVSEFISFITGEANDRCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLSRYREFEGDR 190 69*********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.4E-50 | 88 | 193 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.88E-38 | 97 | 194 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-25 | 100 | 164 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.0E-16 | 128 | 146 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 131 | 147 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.0E-16 | 147 | 165 | No hit | No description |
PRINTS | PR00615 | 1.0E-16 | 166 | 184 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MLGGLREVDE NGGQQHREDE EHTPQRERER EREREMERGE SGGFHGYRRP PQTSSASGMK 60 LQPDMNMRLP DQINNPSSNN STHSTTEHDN ECTVREQDRF MPIANVIRIM RKILPPHAKI 120 SDDSKETIQE CVSEFISFIT GEANDRCQRE QRKTITAEDV LWAMSKLGFD DYIEPLTLYL 180 SRYREFEGDR GSIRGDPFVK RAVDFAPVFQ LRGHHNGFFG SAMGGFFLKD LSNECSSQAP 240 VAGIEPYSQI DK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-60 | 93 | 185 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028076475.1 | 1e-99 | nuclear transcription factor Y subunit B-6 | ||||
Swissprot | Q84W66 | 9e-69 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A2R6PX98 | 1e-159 | A0A2R6PX98_ACTCH; Nuclear transcription factor Y subunit B-6 like | ||||
STRING | VIT_00s0956g00020.t01 | 5e-97 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.1 | 5e-69 | nuclear factor Y, subunit B6 |