PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn341231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | Trihelix | ||||||||
Protein Properties | Length: 235aa MW: 27403.2 Da PI: 9.5085 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 84.1 | 1.8e-26 | 124 | 207 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev+aLi++r+ +++++ +g k + Weev+ ++ g++r++ +Ckekwen+nk+y++++e+ kk+ +++ +tcpyf++l+ Achn341231 124 RWPKSEVQALITVRTALDHKFCKG-PKSASWEEVAVGLSNVGYSRNARKCKEKWENINKYYRRTTENGKKH-PDNGKTCPYFHELD 207 8**********************9.8999****************************************98.88899*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.2E-19 | 123 | 207 | No hit | No description |
CDD | cd12203 | 1.59E-16 | 123 | 187 | No hit | No description |
PROSITE profile | PS50090 | 7.131 | 124 | 180 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MTEPSSRKRK RKTRKNLELL LENLMRKVIQ KQEQMHNQLI EMVEKMERER IIREVAWQKQ 60 EIERVKKDEE TRSEEKSRSL ALISFIKDFL GHEIQIPKFG EASYFEKDTG EITKDLGCDS 120 CNKRWPKSEV QALITVRTAL DHKFCKGPKS ASWEEVAVGL SNVGYSRNAR KCKEKWENIN 180 KYYRRTTENG KKHPDNGKTC PYFHELDILY KNGLINPGNA SHSIKNENEG QECG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 11 | RKRKRK |
2 | 6 | 14 | RKRKRKTRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028076499.1 | 1e-114 | trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2R6PXB6 | 1e-169 | A0A2R6PXB6_ACTCH; Trihelix transcription factor GT-2 like | ||||
STRING | XP_010243939.1 | 5e-87 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12884 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 2e-50 | Trihelix family protein |