PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn338981
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 434aa    MW: 48528.3 Da    PI: 6.206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn338981genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12259302755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Achn338981 259 MAERKRREKLSQRFIALSAIIPGL-----KKMDKASVLGDAIKYLKHLQ 302
                 79**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.697252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-11257306No hitNo description
SMARTSM003536.2E-15258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-15258314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15258315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9259302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MVVSGDDGVG GDDTDTHTYV HTCTYPHSRA CTRAHERRRR SERERCQVGS KSKLNGLKTQ  60
VIKRIYYLIS AGLVTAFMDV SLEKWISELD MDDDDFLDQY QTTFGEFGGF NYVDELTPAL  120
VSEMGEKEDS QQQQHHHQSS SDSHTWSPST FINGSSLEIC ENGIERPSKI TKPTTQNDSV  180
LEEPSPKASL SSHTSSEGSP PQQLNENPEN NSDRKDEVVS NGDLGFIPSN DNKRNAPKVG  240
QKRSNAVVRT SLEAQDRVMA ERKRREKLSQ RFIALSAIIP GLKKMDKASV LGDAIKYLKH  300
LQEHVKLLEG QITKKSEESV VFVNKSQLSG DDDTSSCDEN IDGRRKEALP EIEARISEKN  360
VLIRVHCEKQ KGFAVKLLSE IEKNHLSVVN SSFLPFGQYT IDVTVVAQMD AEFCMTVKDL  420
VRNLRSACLK FNV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265ERKRRE
2261266RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107321.11e-127transcription factor bHLH18-like isoform X1
RefseqXP_028107322.11e-127transcription factor bHLH18-like isoform X1
TrEMBLA0A2R6PA630.0A0A2R6PA63_ACTCH; Transcription factor bHLH18 like
STRINGEOX918222e-99(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-60bHLH family protein