PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn338911

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 297aa MW: 33436.2 Da PI: 4.8126

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn338911	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.1e-10	113	172	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N+++ Lr+++Pk + ++ ++ +iL +++Y+k+L Achn338911 113 LMAERRRRKRLNDRLLMLRSIVPKiSKllvlclisikEWFNEQMDRTSILGDTIDYMKEL 172 589*******************665*****9889999************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.935	107	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-13	109	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-10	113	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-13	114	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-7	114	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00117	222	263	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MVADGSMLFG QDRFVGTLPS PTEPTFSCPP GELYPFVDYY PVPEIDSSYS TPIPIQEEQG 60 FLGCDLNNLE ERFNGCKVEI EHTTTIPEFN SMAFGGERKN RAKKVEGQPS KNLMAERRRR 120 KRLNDRLLML RSIVPKISKL LVLCLISIKE WFNEQMDRTS ILGDTIDYMK ELLEKVQTLR 180 EEDANAGVNQ VNLMGNFKEL KPNEVLVRNS PKFDVERIDT DTRIEISCTP KPGLLLSTVN 240 TLEALGLDVQ QCVISCFNDF SMQASCSEGV QQRTIISSQD IKEALFRNSG YGGRCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	122	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002264407.1	1e-115	PREDICTED: transcription factor bHLH93 isoform X1
Swissprot	Q9LSL1	3e-80	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A2R6PA52	1e-180	A0A2R6PA52_ACTCH; Transcription factor bHLH93 like
STRING	VIT_00s1312g00010.t01	1e-114	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-75	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]