PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn326561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 467aa    MW: 52530.6 Da    PI: 6.3353
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn326561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12291335554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h + Er+RR+++N+ f+ Lr+llP+      +K +Ka++L+ ++eY+ sL
  Achn326561 291 HMISERKRREKLNENFQALRSLLPPG-----TKKDKASVLTGTTEYLASL 335
                 8899********************97.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-16287353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-12288339No hitNo description
Gene3DG3DSA:4.10.280.109.3E-15290352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10291335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDGLYKEEKN NQPSSSSGNL SRRLFDEYRQ KLFPVQNGHV PGLAFNNNFP FMELKELDLQ  60
RLASFQVQQQ FYREAMIKTA VFMGCMAGEI ELGLSNDTQV NLEMEMKKLI PENFSIHLDL  120
PNPTDQSRPS SSSSSLRSLS MDSPECSPFP FNIPSTSYLQ DPPKEAPIER ALSPISPTSS  180
NVSPLCQTIQ GLNQIWNVPF PTPETENDAI TKAILAVLSD SPPSHHQPPQ NLPPNYPVSA  240
FKRYRSTLAP SNPIRRPNML KRAITFFISL SLMRTQNRVQ GSRPTTTQLH HMISERKRRE  300
KLNENFQALR SLLPPGTKKD KASVLTGTTE YLASLKAQVV ELTKRNQILE AQTLPKQEAN  360
EEASEPSNER IHVRVTPVDE STSEWGTIDL QVIVRLECDM LDLVIRLMEF LKDAKNVSVT  420
SMEADTRVVE SNSINRVTLR LTIEGGEWDE SAFQEAVRRV VADVAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299ERKRRE
2295300RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092783.10.0putative transcription factor bHLH041
TrEMBLA0A2R6R4580.0A0A2R6R458_ACTCH; Transcription factor bHLH041 like
STRINGVIT_11s0016g02070.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-71bHLH family protein