PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn317941
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 497aa    MW: 55634.2 Da    PI: 7.2399
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn317941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.1e-0684107126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC  ++r G+C++  +C+FaHg
  Achn317941  84 FKTKLCVLYQR-GHCPR-QSCSFAHG 107
                 69*********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.88783109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-1083113IPR000571Zinc finger, CCCH-type
SMARTSM003560.002583108IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MVVRVAGGSI DPSRSLSPYG EILGLLQHKK PVPLRQALNK LSNDKSKNQN VTFISLSTSI  60
KILNEHVYEV RTNYTTTMGE RKLFKTKLCV LYQRGHCPRQ SCSFAHGDAE LRRFSGSFDG  120
RRDYRGSDLR GKLDRRRSPI RRYSPVRDAR GRHTLRGYSP TSSLGKRSLY PSDRKRRKKQ  180
QLDGQSDFSG SLRVSDDTED GSRDKKLASS DSKGVLEEQL RQVQSDIDSL NNGKCQLEMY  240
LEESVQEVDC LTSRIQELEM QLCQEKEECK RSHDRLQKLG DQLGAEVTRP DANEEDSSIN  300
ILSDGETNGN KLQKDASPKQ KRLRMNVEAA EELKSTNLMK GEGTLLGSIK LGKLSRRNVQ  360
NVQSNNNREV ELEDNGSNNH RIQAIEDRPK QGGIVFTNVL SAEKFKGSEP DFLLPPTSIA  420
AHAVDDVLET NEVDDLNFVG TAAATIEKGS KHGFQGLPFL PPPPPVPPNA YTQYRGEDEN  480
VDVEALEEEM VDVDIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056019.10.0zinc finger CCCH domain-containing protein 13 isoform X1
TrEMBLA0A2R6QCF00.0A0A2R6QCF0_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_12s0059g02450.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA612399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-40C3H family protein