PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn317941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C3H | ||||||||
Protein Properties | Length: 497aa MW: 55634.2 Da PI: 7.2399 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4.1e-06 | 84 | 107 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC ++r G+C++ +C+FaHg Achn317941 84 FKTKLCVLYQR-GHCPR-QSCSFAHG 107 69*********.*****.*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.887 | 83 | 109 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-10 | 83 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 83 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MVVRVAGGSI DPSRSLSPYG EILGLLQHKK PVPLRQALNK LSNDKSKNQN VTFISLSTSI 60 KILNEHVYEV RTNYTTTMGE RKLFKTKLCV LYQRGHCPRQ SCSFAHGDAE LRRFSGSFDG 120 RRDYRGSDLR GKLDRRRSPI RRYSPVRDAR GRHTLRGYSP TSSLGKRSLY PSDRKRRKKQ 180 QLDGQSDFSG SLRVSDDTED GSRDKKLASS DSKGVLEEQL RQVQSDIDSL NNGKCQLEMY 240 LEESVQEVDC LTSRIQELEM QLCQEKEECK RSHDRLQKLG DQLGAEVTRP DANEEDSSIN 300 ILSDGETNGN KLQKDASPKQ KRLRMNVEAA EELKSTNLMK GEGTLLGSIK LGKLSRRNVQ 360 NVQSNNNREV ELEDNGSNNH RIQAIEDRPK QGGIVFTNVL SAEKFKGSEP DFLLPPTSIA 420 AHAVDDVLET NEVDDLNFVG TAAATIEKGS KHGFQGLPFL PPPPPVPPNA YTQYRGEDEN 480 VDVEALEEEM VDVDIF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028056019.1 | 0.0 | zinc finger CCCH domain-containing protein 13 isoform X1 | ||||
TrEMBL | A0A2R6QCF0 | 0.0 | A0A2R6QCF0_ACTCH; Zinc finger CCCH domain-containing protein | ||||
STRING | VIT_12s0059g02450.t01 | 1e-124 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6123 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 1e-40 | C3H family protein |