PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn314731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 300aa MW: 34040.8 Da PI: 9.6965 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78 | 1.8e-24 | 148 | 236 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn Y++ + Fs+r+ +s+ksk++g + r+fvCsk+g+r ++k+ +r+r+etr++C+a++ +++++ ++kw+v +e++HnH+l Achn314731 148 EFYNGYGRVMEFSIRICYSTKSKKDGVLIGRKFVCSKQGTRGKDKRY-LVVERPRKETRIKCDANMSISLNReTSKWVVVGFEEKHNHSL 236 6*******************************************999.88899******************99***************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.4E-20 | 148 | 236 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MFVTKTKRDG YPLEQSKLSS IASNLCAKEG KWYTSKRKSS CKLDENILLK RQILFINGEQ 60 NRSFLRFRAN REEDDRKSRS DLLRDYHPRR SSSLSLSSSE TTNLAGVPLR SLSLSFLDVM 120 NVKENEHLIE NYTPCLQKEF ESEEAAYEFY NGYGRVMEFS IRICYSTKSK KDGVLIGRKF 180 VCSKQGTRGK DKRYLVVERP RKETRIKCDA NMSISLNRET SKWVVVGFEE KHNHSLHLPE 240 CAHMMKSQRT ICEAQAINVD IAADSGLSLK ASHDFLSAQA GGEGVLRLHT GGPKKLPEG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028051873.1 | 2e-63 | protein FAR1-RELATED SEQUENCE 5-like |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-16 | FAR1-related sequence 5 |