PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn314161
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 852aa    MW: 93238.6 Da    PI: 8.041
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn314161genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19319419199
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++++  +++lv++
  Achn314161 319 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMNLQAGDTVIFSRID-PGGKLVMG 415
                 99**************************666678889***************9989999999***9.********************887.78888888 PP

                 EE-S CS
          B3  96 vfrk 99 
                 ++++
  Achn314161 416 FRKA 419
                 7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-30315424IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-21316419IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-25317418No hitNo description
PROSITE profilePS5086311.434319420IPR003340B3 DNA binding domain
PfamPF023621.5E-16319418IPR003340B3 DNA binding domain
SMARTSM010191.6E-22319420IPR003340B3 DNA binding domain
PROSITE profilePS5105013.949544594IPR011124Zinc finger, CW-type
PfamPF074963.1E-9549591IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MVGVVAWLSE GVWGIGWVVS GGGGGGGLLQ VNGDDLHERS LSYDDDARVE ERTAYEDLVY  60
CETFHLQESG WRECKLCGKI PNDDIPNGFR SLTANNIEDP QPSYVAISKN PSYVENRMGG  120
ISLDKGKRVL LCKTMDAIEL SPCPQRQRSN TNGFIGKTKR DEIKLPIGEV GLDFPNLIHH  180
SVGSSTFSKL ENSRQTLGAN DMYASLAQPS LDFALGTSLD TSNSVFPSSG VAVDGREQNK  240
SPHFQQDQRT RPILPKPSKS GLAIGLEANK GMVSQIPVAR PPAEGRSRTQ LLPRYWPRIT  300
DQELQQISGD LNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ SEGIPIRIQD  360
IKGKEWTFQF RFWPNNNSRM YVLEGVTPCI QNMNLQAGDT VIFSRIDPGG KLVMGFRKAS  420
NSVDMQDSQT STLPNGAPTG ETSLSGAKDT MPSKNGGGTN EDSSQWSMLM AEKKTRKIGS  480
KSKRLLMHSK DTVKLRLTWD DAQELLRPSP SAKPTIVMVE GHEFEEYNEP PVFGKRTIFT  540
ARASGEREQW AQCDSCCKWR RLPVDFLLPP KWTCSDNIGD SSRCSCSAPD EMNPKELESL  600
LRFGKDFKKR RITESPKVAQ ERELSGLDAL ATAAVLGADA GDSGNPSEGA TTKHPRHRPG  660
CTCIVCIQPP SGKGRHKATC ICNVCLTVRR RFKTLKLRRK KLQAEREAEI AKGKQPVPPK  720
EGSKMDGGMS ANASPHPNSS EDERSKNKVP KDKRSTNKVP TDLESSKGQL DLNFHPNRDD  780
DLPVEIAGLS MTSLVRAACL PLDVYLRESG LPKLGPCLLS QAACESDGGL VNEGCVTSLV  840
GKLNENEVDE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-722974262131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1688700RRRFKTLKLRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056621.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_028056622.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_028056623.10.0B3 domain-containing transcription repressor VAL1 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2R6QJH50.0A0A2R6QJH5_ACTCH; B3 domain-containing protein
STRINGEOY347050.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]