PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn313941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 27129.2 Da PI: 8.1191 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Achn313941 90 FSCNYCRRKFYSSQALGGHQNAH 112 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.82E-6 | 87 | 117 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MKRPSINLES KDDSEVSGQI PTHISNQEIS HDPSKDSATT SSCLSNPIKY QTDPGPVTLD 60 LTLRFDSRDV ESKGKGETSN ELAAQPSRVF SCNYCRRKFY SSQALGGHQN AHKRERTLAK 120 RAMRMGMLTD RYASLASLPL HGSTFRSLGI EAHASVHQRI LPYTRPFPEI RGGARFEQSY 180 FGSPIFVDDD EAELFWPGSF RQIGEGVHHN VVFNSGQSSN INFVAMAPPP RTDNSSSSPD 240 LALKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028080117.1 | 1e-112 | zinc finger protein 4-like | ||||
Refseq | XP_028080118.1 | 1e-112 | zinc finger protein 4-like | ||||
Refseq | XP_028080119.1 | 1e-112 | zinc finger protein 4-like | ||||
Refseq | XP_028080120.1 | 1e-112 | zinc finger protein 4-like | ||||
Refseq | XP_028080122.1 | 1e-112 | zinc finger protein 4-like | ||||
Refseq | XP_028080123.1 | 1e-112 | zinc finger protein 4-like | ||||
Swissprot | Q39263 | 4e-46 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A2R6QQJ2 | 0.0 | A0A2R6QQJ2_ACTCH; Zinc finger protein | ||||
STRING | XP_009768278.1 | 1e-109 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-48 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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