PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn310341
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 429aa    MW: 47228.1 Da    PI: 5.2019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn310341genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13260305454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Achn310341 260 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIQEL 305
                 799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-4424178IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.244256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-18257320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-15259310No hitNo description
PfamPF000102.1E-10260305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17260325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDEFIISSSS SSSFVSSQES SPTLQKRLEF IVQNQPEWWA YAIFWQSSKD DHGRLLLAWG  60
DGHFQGTKDA VPKHIATLHE PMDGEVVTDA ECFYVVSLSR SFSAGDGVPW KSFSSGSLVW  120
LAGTHQLQFY NCERVKEAQI HGIQTLVCIP TSCGVVELGS CDVITENWGL VQQAKSLFGS  180
DLISVPKNPN PSDGSIQFVE GNVSFADIGI ITGLEEDPMN SESEHSDSDC AAVKERTEQQ  240
QKIPKKRGRK PGVGRETPVN HVEAERQRRE KLNHRFYALR AVVPNVSRMD KASLLSDAVS  300
YIQELKAKVE DLESQVHDPR DSCKKVKMEV ADNQSTTTSV DHSLSMSGVP LEVEVKIVGL  360
DAMIRVQSDN ANHPTARLMD ALRDLELSVH HGSMSSVNDL MLQDVVIRAP QGLSGEDELK  420
AALLKRLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-30181783192Transcription factor MYC3
4rqw_B1e-30181783192Transcription factor MYC3
4rs9_A1e-30181783192Transcription factor MYC3
4yz6_A1e-30181783192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051457.20.0PREDICTED: transcription factor bHLH14
TrEMBLA0A2R6Q7N80.0A0A2R6Q7N8_ACTCH; Transcription factor like
STRINGEOX956140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-94bHLH family protein