PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn307731

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HD-ZIP

Protein Properties

Length: 693aa MW: 76743 Da PI: 5.4456

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn307731	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.7	1.5e-16	53	111	1	56
TT--SS--HHHHHHHHH...HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLee...lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+ +F+++++p+ ++r+eL+++l+L+ q+k+WFqN+R+++k Achn307731 53 KKRYHRHTQHQIQEMEAgtsFFKECPHPDDKQRKELSRELRLEPLQIKFWFQNKRTQMK 111 688999*******965558*********************************998 PP
2	START	119.4	5e-38	238	392	1	137
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 ela +a++el ++a+ +e +W +n++e+ ++f+++ + +++ea+r+s+vv+m++++lve+l+d + qW++++ +a+tlev+s+ Achn307731 238 ELAVAAMEELTRMAQMGELLWIPGIdstYLLNEEEYFKIFPRGIGskplgFRSEASRESAVVIMNPTNLVEILMDAN-QWSTMFSgivsRAMTLEVLST 335 57899**************9877656679*******999****************************.***************** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS-- CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkpp 137 g galq+m+ae+ +lsp+vp R+++fvRy++q+ +g+w++vdvS+ds +++p Achn307731 336 GvagnfnGALQVMTAEFHVLSPVVPtRESYFVRYCKQHVDGSWAVVDVSLDSLRPNP 392 ****************************************************998 PP
3	START	41.3	4.1e-14	394	436	164	206
EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtw+ehv++++r +h+++r+lv+sgla+gak+wv tl+rqce+ Achn307731 394 VTWIEHVEVDDRGVHSIYRPLVNSGLAFGAKRWVCTLDRQCER 436 8****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-19	33	111	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.84E-15	40	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.058	50	113	IPR001356	Homeobox domain
SMART	SM00389	1.1E-12	51	117	IPR001356	Homeobox domain
CDD	cd00086	2.37E-16	52	111	No hit	No description
Pfam	PF00046	5.3E-14	53	111	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	25.927	229	439	IPR002913	START domain
SuperFamily	SSF55961	1.1E-24	231	437	No hit	No description
CDD	cd08875	1.17E-105	233	435	No hit	No description
SMART	SM00234	1.2E-43	238	436	IPR002913	START domain
Pfam	PF01852	1.7E-29	239	392	IPR002913	START domain
Pfam	PF01852	3.9E-9	394	436	IPR002913	START domain
SuperFamily	SSF55961	5.77E-21	461	682	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MMTYQLNPLD MAHSTADSDV GRVREEEFDS KSGSENHEGG SGNEQDPNQR PRKKRYHRHT 60 QHQIQEMEAG TSFFKECPHP DDKQRKELSR ELRLEPLQIK FWFQNKRTQM KMQHERLENT 120 ALRNENDKLR SDNMKYREAL SNASCLNCGG PTAVDEMSFD EQHLRVENSR LREEIDRISA 180 IAAKYVGKPV ANYPIVSPPI TPRSLELGNF GGELYGAGDL VRSIGGPSEQ SDKQMIIELA 240 VAAMEELTRM AQMGELLWIP GIDSTYLLNE EEYFKIFPRG IGSKPLGFRS EASRESAVVI 300 MNPTNLVEIL MDANQWSTMF SGIVSRAMTL EVLSTGVAGN FNGALQVMTA EFHVLSPVVP 360 TRESYFVRYC KQHVDGSWAV VDVSLDSLRP NPLVTWIEHV EVDDRGVHSI YRPLVNSGLA 420 FGAKRWVCTL DRQCERLAIA MATNLPPTHD VANSVISCIE GKRSLLKLSE RMVMSFCGGV 480 SASNAHTWTT LSGSGADDVR VMTRKSVDDP GRPPGIVLSA ATSFWLPVPP KRVYEFFRDE 540 HSRNEWDILS NGGMIQEMER IAIGRETGNC ISLLRVNTVN RNQNNMLILQ ESCIDQTGSY 600 IIYSPVDVVV MNLVLGGGDP DFVPILPSGF SILPDGLNGE GGSSGSLLTV AFQILVDSSP 660 NAKLSLGSVA TVNNLITCSV ERIKGAVASE NL*

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MMTYQLNPLD MAHSTADSDV GRVREEEFDS KSGSENHEGG SGNEQDPNQR PRKKRYHRHT  60
QHQIQEMEAG TSFFKECPHP DDKQRKELSR ELRLEPLQIK FWFQNKRTQM KMQHERLENT  120
ALRNENDKLR SDNMKYREAL SNASCLNCGG PTAVDEMSFD EQHLRVENSR LREEIDRISA  180
IAAKYVGKPV ANYPIVSPPI TPRSLELGNF GGELYGAGDL VRSIGGPSEQ SDKQMIIELA  240
VAAMEELTRM AQMGELLWIP GIDSTYLLNE EEYFKIFPRG IGSKPLGFRS EASRESAVVI  300
MNPTNLVEIL MDANQWSTMF SGIVSRAMTL EVLSTGVAGN FNGALQVMTA EFHVLSPVVP  360
TRESYFVRYC KQHVDGSWAV VDVSLDSLRP NPLVTWIEHV EVDDRGVHSI YRPLVNSGLA  420
FGAKRWVCTL DRQCERLAIA MATNLPPTHD VANSVISCIE GKRSLLKLSE RMVMSFCGGV  480
SASNAHTWTT LSGSGADDVR VMTRKSVDDP GRPPGIVLSA ATSFWLPVPP KRVYEFFRDE  540
HSRNEWDILS NGGMIQEMER IAIGRETGNC ISLLRVNTVN RNQNNMLILQ ESCIDQTGSY  600
IIYSPVDVVV MNLVLGGGDP DFVPILPSGF SILPDGLNGE GGSSGSLLTV AFQILVDSSP  660
NAKLSLGSVA TVNNLITCSV ERIKGAVASE NL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028123594.1	0.0	homeobox-leucine zipper protein HDG2-like isoform X1
Refseq	XP_028123595.1	0.0	homeobox-leucine zipper protein HDG2-like isoform X1
Refseq	XP_028123596.1	0.0	homeobox-leucine zipper protein HDG2-like isoform X1
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A2R6QTG6	0.0	A0A2R6QTG6_ACTCH; Homeobox-leucine zipper protein
STRING	VIT_12s0059g02310.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA932	24	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]