PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn307721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 21228.6 Da PI: 4.6127 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.4e-09 | 138 | 180 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ ++++E+ l+ + ++ G + W++Ia +++ gR+++++ +w Achn307721 138 KLEFSEDEETLITRMYNLVGER-WSLIAGRIP-GRSAEEIEKYWT 180 678*******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.780.10 | 3.5E-30 | 14 | 88 | IPR001950 | Translation initiation factor SUI1 |
SuperFamily | SSF55159 | 2.09E-19 | 17 | 87 | IPR001950 | Translation initiation factor SUI1 |
Pfam | PF01253 | 7.7E-16 | 35 | 84 | IPR001950 | Translation initiation factor SUI1 |
CDD | cd11566 | 1.72E-30 | 36 | 88 | No hit | No description |
PROSITE profile | PS50296 | 16.285 | 38 | 89 | IPR001950 | Translation initiation factor SUI1 |
PROSITE profile | PS50090 | 7.097 | 133 | 183 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.6E-8 | 137 | 185 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-8 | 139 | 180 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.06E-7 | 140 | 183 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.14E-8 | 140 | 179 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 140 | 181 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006413 | Biological Process | translational initiation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003743 | Molecular Function | translation initiation factor activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MKEGELSIAF NCAISLPNLD PFAEASTEDS GAGTKEYVHV RTQQRNGRKS LTTVQGLKKE 60 FSYNKILKDL KKEFCCNGTV VQDPELGQQP PMPPPTNSFF LASFNSCLFS TIMADLEQYS 120 SSDNASVDSR EYSSQDSKLE FSEDEETLIT RMYNLVGERW SLIAGRIPGR SAEEIEKYWT 180 SRYSTSEGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ogh_A | 7e-23 | 15 | 88 | 5 | 76 | Eukaryotic translation initiation factor eIF-1 |
2rvh_A | 7e-23 | 15 | 88 | 5 | 76 | Eukaryotic translation initiation factor eIF-1 |
3j80_j | 7e-23 | 15 | 88 | 5 | 76 | eIF1 |
3j81_m | 7e-23 | 15 | 88 | 5 | 76 | eIF1 |
3jam_j | 7e-23 | 15 | 88 | 5 | 76 | eIF1 |
3jap_m | 7e-23 | 15 | 88 | 5 | 76 | eIF1 |
3jaq_m | 7e-23 | 15 | 88 | 5 | 76 | eIF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498HG61 | 5e-76 | A0A498HG61_MALDO; Uncharacterized protein | ||||
STRING | PGSC0003DMT400061864 | 6e-67 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6579 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 1e-17 | MYB_related family protein |