PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn302451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 767aa    MW: 83855.5 Da    PI: 6.6078
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn302451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.2e-21107162156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Achn302451 107 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 162
                 688999***********************************************999 PP
2START200.95.3e-632724961206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela++a++elvk+a+ +ep+W++s     e++n d +l++f++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e ++    + +t++vis
  Achn302451 272 ELALAAMEELVKMAQTDEPLWFRSFeggrEILNHDAYLRTFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDSN-RWAEIFPcmiaRTTTTDVIS 369
                 5899**************************************99999***9***************************.**********9********* PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 sg      galqlm aelq+lsplvp R++ f+R+++q+++g+w++vdvS+d   + +    +  +++lpSg+++++++ng+skvtwveh++++++++h
  Achn302451 370 SGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHTEGVWAVVDVSIDGIGETSGALTFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESIVH 468
                 *****************************************************99999899************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++r+l++ g+ +ga++wvatlqrqce+
  Achn302451 469 QIYRPLIGAGMGFGAQRWVATLQRQCEC 496
                 **************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-2190164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-2294164IPR009057Homeodomain-like
PROSITE profilePS5007117.248104164IPR001356Homeobox domain
SMARTSM003892.2E-17105168IPR001356Homeobox domain
CDDcd000862.22E-18106164No hitNo description
PfamPF000461.8E-18107162IPR001356Homeobox domain
PROSITE patternPS000270139162IPR017970Homeobox, conserved site
PROSITE profilePS5084843.177263499IPR002913START domain
SuperFamilySSF559615.5E-32265496No hitNo description
CDDcd088752.26E-124267495No hitNo description
SMARTSM002346.4E-49272496IPR002913START domain
PfamPF018527.6E-55272496IPR002913START domain
SuperFamilySSF559612.58E-23524694No hitNo description
SuperFamilySSF559612.58E-23722762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MSFGGFLDNN SGGGGGARIV ADIPYSSTTM PARVLSPSLT KSMFTSPGLS LALQTNMEGQ  60
GEATRIAENY EGNVGRRSRE EHESRSGSDD GGGSGDDQDG DDKPPRKKRY HRHTPQQIQE  120
LESLFKECPH PDEKQRLELS KRLCLETRQV KFWFQNRRTQ MKTQLERHEN SILRQENDKL  180
RAENMSIREA MRNPICTNCG GPAIIGDISL EEQQLRIENA RLKDELDRVC AMAGKFLGRP  240
IPAMPNSSLE LGVGSNGFGG VERSLERSMY LELALAAMEE LVKMAQTDEP LWFRSFEGGR  300
EILNHDAYLR TFTPCIGLKP NGFVTEASRE TGMVIINSLA LVETLMDSNR WAEIFPCMIA  360
RTTTTDVISS GMGGTRNGAL QLMHAELQVL SPLVPVREVN FLRFCKQHTE GVWAVVDVSI  420
DGIGETSGAL TFLNCRRLPS GCVVQDMPNG YSKVTWVEHA EYDESIVHQI YRPLIGAGMG  480
FGAQRWVATL QRQCECLAIL MSSTVPSRDH TAITASGRRS MLKLAQRMTD NFCAGVCAST  540
VHKWNKLSAT NVDEDVRVMT RKSVEDPGEP PGIVLRAATS VWLPVSPQRL FDFLRDERLR  600
SEWDILSNGG PMQEMAHIAK GQDHGNCVSL LRASAMNPNQ SSMLILQETC IDAAGSLVVY  660
APVDIPAMHV VMNGGDSAYV ALLPSGLAIV PDGPGSRGPT TCNRLGSVNG PSRVGGPTHR  720
VGGSLLTVAF QILVNSLPTA KLTVESVETV NNLISCTVQK IKAALQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661562.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A2R6R9Y70.0A0A2R6R9Y7_ACTCH; Homeobox-leucine zipper protein like
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]