PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn299631

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 429aa MW: 49250.4 Da PI: 6.7495

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn299631	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	165	188	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg+ F+++ +Lk+H r H Achn299631 165 YNCAVCGRKFRTNLDLKKHFRQlH 188 89*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	3.4E-7	84	154	IPR029060	PIN domain-like
SMART	SM00355	0.0051	165	188	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	13.131	165	193	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	167	188	IPR007087	Zinc finger, C2H2
CDD	cd06167	4.88E-12	177	319	No hit	No description
Gene3D	G3DSA:3.40.50.1010	3.4E-7	250	316	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MNPLCNCSEI LPFKSPPLPL ASLLPYPKFK PQFPHHVTFK PNFTFQFKPP ILPNQLPWRP 60 IKVTVARNSE IDMVRTTEGV YAPKPKKVVV LWDLDNKPPR GPPYLAALAL RRVAERFGEV 120 VDISAYANRH AFVHLPHWVI EERRERRRLD FLERKGAPAP SPEIYNCAVC GRKFRTNLDL 180 KKHFRQLHER ERQKKLNRMR SLKGKKRQRY KERFVSNNHK YMEAARDLIT PKVGYGLASE 240 LKRAGVYVKT VEDKPQAADW ALKKQMQHSL SRGIDWLFLV SDDSDFSEML RRARESNLGT 300 VVVGDWDRAL GRHADLWVPW AGVENGEISD KDLRPRRRER GGFVKRGDGS FSVSGFDGEG 360 GGEGNLDSVV DELVGLRTDF HSMEISTFSD GEAEENGDYE EDGDFLYDSE DEDSEDDDDD 420 DDDNNDYF*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MNPLCNCSEI LPFKSPPLPL ASLLPYPKFK PQFPHHVTFK PNFTFQFKPP ILPNQLPWRP  60
IKVTVARNSE IDMVRTTEGV YAPKPKKVVV LWDLDNKPPR GPPYLAALAL RRVAERFGEV  120
VDISAYANRH AFVHLPHWVI EERRERRRLD FLERKGAPAP SPEIYNCAVC GRKFRTNLDL  180
KKHFRQLHER ERQKKLNRMR SLKGKKRQRY KERFVSNNHK YMEAARDLIT PKVGYGLASE  240
LKRAGVYVKT VEDKPQAADW ALKKQMQHSL SRGIDWLFLV SDDSDFSEML RRARESNLGT  300
VVVGDWDRAL GRHADLWVPW AGVENGEISD KDLRPRRRER GGFVKRGDGS FSVSGFDGEG  360
GGEGNLDSVV DELVGLRTDF HSMEISTFSD GEAEENGDYE EDGDFLYDSE DEDSEDDDDD  420
DDDNNDYF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028080421.1	0.0	uncharacterized protein LOC114281999
TrEMBL	A0A2R6Q081	0.0	A0A2R6Q081_ACTCH; Fez family zinc finger protein
STRING	XP_004292807.1	1e-180	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12268	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-135	C2H2-like zinc finger protein