PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn290421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | Trihelix | ||||||||
Protein Properties | Length: 549aa MW: 61951.6 Da PI: 7.6579 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.2 | 1.4e-30 | 51 | 135 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k++e gf+rs+k+Ckek+en+ k++k++keg++ ++ + +++++fdqlea Achn290421 51 RWPRQETLALLKIRSDMDAAFRDSSLKGPLWEEVSRKLAELGFHRSAKKCKEKFENVYKYHKRTKEGRSTKS--EGKNYRFFDQLEA 135 8********************************************************************864..4457*******85 PP | |||||||
2 | trihelix | 108.8 | 3.6e-34 | 390 | 475 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r+e+++++++g k+plWee+s++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Achn290421 390 RWPKTEVEALIKIRTELDSKYQEGVPKGPLWEEISSAMRKVGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 475 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0036 | 48 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 9.4E-20 | 50 | 136 | No hit | No description |
CDD | cd12203 | 3.16E-24 | 50 | 115 | No hit | No description |
PROSITE profile | PS50090 | 6.864 | 50 | 108 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0013 | 387 | 449 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.04E-27 | 389 | 454 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-4 | 389 | 446 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.8E-23 | 389 | 476 | No hit | No description |
PROSITE profile | PS50090 | 7.503 | 389 | 447 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MLGVLGSSED GTAEAEGGGG GEGGVVGTSL SEEEKVRIEE GERSSCRGVN RWPRQETLAL 60 LKIRSDMDAA FRDSSLKGPL WEEVSRKLAE LGFHRSAKKC KEKFENVYKY HKRTKEGRST 120 KSEGKNYRFF DQLEALENQP NSLQFLPPPR SQPQAMPLTI TNPLPPQPPP PLIVSQVSIP 180 PIPNPINPLL SNQPPPPNPT QNTGMASSHP KMPENSASIS NSSASTSSDV DPERRRKRKR 240 KWEAFFQRLM KEVFQKQEEM QKKFLETLER RDRDRVVREE AWRAQEMARM NREHDLLAHE 300 RSIAATKDAA VIAFLQKVSD QQIPNAPQMQ MQEPPIRHVQ PPPPPPVQPQ PLPQPQPAQL 360 SIHPAANNLE TLKNDNGKDN TNFLPTSSSR WPKTEVEALI KIRTELDSKY QEGVPKGPLW 420 EEISSAMRKV GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDALYREK 480 TSKIGVGDTS SALDPMVPIM VQPEQQWPLS QENDHSNNHD SGEDEEEEDE AVGYEIVTNK 540 ASSVGTGE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 239 | RRKRKR |
2 | 234 | 240 | RRKRKRK |
3 | 235 | 240 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061205 | 8e-45 | BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028117969.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-143 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2R6Q106 | 0.0 | A0A2R6Q106_ACTCH; Trihelix transcription factor GT-2 like | ||||
STRING | Solyc12g056510.1.1 | 1e-172 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 7e-86 | Trihelix family protein |