PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn272901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 367aa    MW: 40277.2 Da    PI: 7.6184
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn272901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.43.8e-25992242128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlskk 96 
                 p Gf+F+P+d+el+ + L  kv+g++l+++e  i+e d++ k ePw++    +++ek+ yfF+k +kk +   g++  r++ +g+Wk +  + ++++++
  Achn272901  99 PYGFKFSPEDHELI-YILYSKVNGNSLPVDEGlIEERDLFgKEEPWEIF--GRGTEKSRYFFVKLKKKGKsaDGSNFVRTVGKGTWKGQDGQIPIKDQQ 194
                 89************.99*********99987779***9883569****6..34567889***9988876633689999********************* PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 g+++g kk Lv+  g+ p+ ++ +W+m+ey+l
  Achn272901 195 GRTIGFKKNLVYK-GKGPN-TNGRWLMKEYHL 224
                 ***********96.99999.799********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-2892246IPR003441NAC domain
PROSITE profilePS5100529.37398246IPR003441NAC domain
PfamPF023651.5E-1599224IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAVQVPSRIQ AAHQMALPVP SVPSPVQASH LMAVPVPSRI QAAHQMALPV PSVPSPVQAF  60
HLMAVPVPSR IQAAHQMALP VPSVPSPIQA SHQMALSIPY GFKFSPEDHE LIYILYSKVN  120
GNSLPVDEGL IEERDLFGKE EPWEIFGRGT EKSRYFFVKL KKKGKSADGS NFVRTVGKGT  180
WKGQDGQIPI KDQQGRTIGF KKNLVYKGKG PNTNGRWLMK EYHLHGVSLQ PPPKLNDYVL  240
CRIRKKDDGK KQNVQNQDGE GFGSVSCAEN SILGRKRPRI EYMIDHELPN LSVADAPIMV  300
ESLAQEEPRI DKEGDQRMDC LGAENCIPAL SEGISKSFTQ DDDAEVFGGL CPILDISLDE  360
GFGGRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-169324810170Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165LKKKGKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PW300.0A0A2R6PW30_ACTCH; NAC domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13708311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-18NAC family protein