PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn271431
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 528aa    MW: 57657.9 Da    PI: 7.7655
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn271431genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY110.11e-34235291259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnh+
  Achn271431 235 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQITEIIYKGQHNHQ 291
                 8****************************************.***************8 PP
2WRKY105.52.7e-33414472159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Achn271431 414 LDDGYRWRKYGQKIVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVVTTYEGKHNHD 472
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-31226293IPR003657WRKY domain
SuperFamilySSF1182906.93E-27232293IPR003657WRKY domain
SMARTSM007745.1E-39234292IPR003657WRKY domain
PROSITE profilePS5081123.617235293IPR003657WRKY domain
PfamPF031061.9E-26235291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-37400474IPR003657WRKY domain
SuperFamilySSF1182901.03E-29406474IPR003657WRKY domain
PROSITE profilePS5081139.008409474IPR003657WRKY domain
SMARTSM007741.6E-39414473IPR003657WRKY domain
PfamPF031064.3E-26415472IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAENQGSSSS SSSRASSAHL RPTINPPPRT SLASLFTGGL SPGPMTLVSN FFSESDPDSD  60
CRSFSQLLAG AMTSPASAAP GHRPKFPAAE DKVSGGDVDF RFKQNRPTGL MIAQSQPLFM  120
VPPGLSPASL LDSPGLLSAG QAPFGMSHQQ ALAQVTAQAS QAHSHMHNQS EFPSSLSAAP  180
AASLPLLPSF TSNLTIHQQM PPSMPEPSIM EESSDFSHPD QRSQPSSLVV DKPADDGYNW  240
RKYGQKQVKG SEFPRSYYKC THPNCPVKKK VERSLDGQIT EIIYKGQHNH QPPQSSKRAK  300
DGGNPNGSLN NQGNSELGME GRMGDLNKMK ERLPAYSLSM KDQESSQAIP EHLQGSSDSE  360
EVGDTETRVD ERDQDEPEAK RRNTEARISE PVSSHRTVAE PRIIVQTTSE VDLLDDGYRW  420
RKYGQKIVKG NPYPRSYYKC TSQGCNVRKH VERAASDPKA VVTTYEGKHN HDVPAARNSS  480
HNTANNSLSQ LKPHSAISDK HTLVRETEFG KNDSQPSMLR RFKEELT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-42235475878Probable WRKY transcription factor 4
2lex_A2e-42235475878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028111113.10.0probable WRKY transcription factor 3 isoform X1
RefseqXP_028111114.10.0probable WRKY transcription factor 3 isoform X1
SwissprotQ9XI901e-176WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2R6PBM90.0A0A2R6PBM9_ACTCH; WRKY transcription factor
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-170WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]