PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn270131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 308aa    MW: 34481.5 Da    PI: 7.7165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn270131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.8e-13129176355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h  +Er+RR+++ ++f  L  ++P +     kK++Ka++Le A++Y+k+Lq
  Achn270131 129 QEHILAERKRREKLSQRFIALSAIIPGL-----KKMDKATVLEDAIKYLKQLQ 176
                 57999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-11129176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17130187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17130193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-13131180No hitNo description
SMARTSM003532.4E-15132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MPTAKISEEK GMDDSAFIHQ WPINSLDELS MVTVEDSFEE SFHNSFSHPL FSLKRSPETS  60
LSGINQPSKM QKSISLNSSR THHEDALSPK SVTTFLSDTL AFGNSFGNQN YVFKSSQGAK  120
RISTNPNNQE HILAERKRRE KLSQRFIALS AIIPGLKKMD KATVLEDAIK YLKQLQDQVK  180
TLEEQTKKKP IESAVFVRKY ELCAEGDKSS LDENLLGGPY DEPLPEIEAR ICEKNVLIKI  240
HCEKRKGVLE KTIVELEKFH LSIANSSVLT FGSSALNITV VAQMEVGFTM TVKDLVKHLH  300
ASLKLFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERKRRE
2135140RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126694.11e-135transcription factor bHLH25-like
SwissprotQ9T0721e-56BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2R6R2390.0A0A2R6R239_ACTCH; Transcription factor bHLH25 like
STRINGVIT_03s0088g01240.t011e-113(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-59bHLH family protein