PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn269791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 435aa MW: 47611.8 Da PI: 9.5347 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.6 | 4.4e-20 | 17 | 106 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+laLiea+r+++ +lrrg l+ ++W++v++++ + g +++ qC++k+e+l++ry+ +k+++ + + s++ +fd+++ Achn269791 17 CWTQDETLALIEAYRDRWLALRRGYLRTADWDAVAEAVavrcPAAGAAKTSAQCRHKMEKLRQRYRTEKQRSLSFPGRFFSSWFFFDNMD 106 8***********************************9999999******************************99889999******998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-20 | 16 | 108 | No hit | No description |
PROSITE profile | PS50090 | 6.377 | 18 | 78 | IPR017877 | Myb-like domain |
SMART | SM00595 | 4.3E-6 | 25 | 113 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 435 aa Download sequence Send to blast |
MSTTPAEKPP RKFPAPCWTQ DETLALIEAY RDRWLALRRG YLRTADWDAV AEAVAVRCPA 60 AGAAKTSAQC RHKMEKLRQR YRTEKQRSLS FPGRFFSSWF FFDNMDSLGI GSTTAVGSNQ 120 ESANRTVDSI GGLLSIKGLS EHDLVDSVLR TKNSRPNIEG GVDLGSGFRG NQNLVTIGFR 180 AKNSGKMDGN SRVLNGNSSY VDEGSDDDVG DDTDFGGGFR DRNPIDGKLV PPLIRAKKLE 240 KIHGGFGSNF DSNHDDGDGG GDDDDGGFFV RNPIDPHLVP PGYRGKKFGK VDGKLNPNFV 300 CADGSYAVPT GFRTKGFGKN LGYSYPNLDS RFSNGFASGV GLGLGKKNGD RGVKRERGGI 360 GEMVSSIKLL GDGFVMMEKM KMEMAREIEK MRMEMEMKRN ELILESQRQI VDAFVTVLME 420 KKKKKASPTV LPES* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028116102.1 | 0.0 | protein FIP2-like | ||||
TrEMBL | A0A2R6QNT2 | 0.0 | A0A2R6QNT2_ACTCH; Trihelix transcription factor |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12774 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44730.1 | 3e-22 | Trihelix family protein |