PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn266121

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HSF

Protein Properties

Length: 274aa MW: 30200.7 Da PI: 7.7142

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn266121	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.5	7.9e-37	10	102	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d++++e+i w+e g++fvv+++++fak++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF++++Fk+g+kell +i+ Achn266121 10 FLMKTYELVDDQTTNEVIGWNEGGTTFVVWKTDDFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQKELLAQIR 97 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Achn266121 98 RRKTA 102 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.3E-56	6	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.72E-34	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.6E-38	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.7E-32	10	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-20	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-20	48	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	49	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-20	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGQRALPAPF LMKTYELVDD QTTNEVIGWN EGGTTFVVWK TDDFAKDLLP KYFKHNNFSS 60 FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLAQIRRRK TATSAPAAAA KSAAGPSSPS 120 NSGNDLGSTS MSSPDSKNAG SVDAPAARAQ LTDLSDENRK LKRDNEMLTS ELARAKRHCS 180 ELIAFLTNYV KVAPDQIDHI MRQESSGPTL SGLDGEIGST GHNNGNYEED NDNEIMKEEN 240 GEGLKLFGVW LKGDGKKRVR EENLGFGGVH PKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-25	2	104	13	125	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021274874.1	1e-124	heat shock factor protein HSF24
Swissprot	P22335	1e-110	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	A0A2R6PAD9	0.0	A0A2R6PAD9_ACTCH; Heat shock factor protein
STRING	EOX91407	1e-122	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9991	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	6e-73	heat shock factor 4

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]