PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn253211
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 509aa    MW: 56964.5 Da    PI: 5.6264
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn253211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33e-12107148345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W ++E+ ll+++++++G g+W+ +a+++g ++   qc+++++
       Achn253211 107 DWNADEEILLLEGIEMYGLGNWNEVAEHVG-TKNKTQCIDHYN 148
                      5*****************************.99999******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250247.0E-12935471IPR016827Transcriptional adaptor 2
SMARTSM002913.5E-104489IPR000433Zinc finger, ZZ-type
PfamPF005691.6E-94688IPR000433Zinc finger, ZZ-type
CDDcd023354.79E-244896No hitNo description
SuperFamilySSF578501.15E-1348111No hitNo description
PROSITE profilePS5013510.8694891IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135705077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466898.97E-13100154IPR009057Homeodomain-like
PROSITE profilePS5129322.141103155IPR017884SANT domain
SMARTSM007176.5E-11104153IPR001005SANT/Myb domain
PfamPF002499.7E-12107148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-8107149IPR009057Homeodomain-like
CDDcd001672.32E-11108148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MAAHVCGVGV CSACVRCGSV HVHVCMCIIG SPCVNACRGM NEGKKALYHC NYCNKDISGK  60
IRIKCVVCPD FDLCMECFSV GAEVTPHKSN HSYRVMDNLS FPLICSDWNA DEEILLLEGI  120
EMYGLGNWNE VAEHVGTKNK TQCIDHYNVI YMNSPCFPLP DMSHVMGKNR EELLAMAKEH  180
GEVNKGFPTL GELTVKEEPP LSARVKVEDQ RKEGSVGRSS SLISEIGTGA GAGSGKTSVS  240
EVKKASQIND GPEDIKEEDS HADRSIGEKK PRMSGDEGPS MKELSGYNSK RQEFEIEYDN  300
DAEQLLADME FKGTDSDAEH ELKLRVLRIY SKRLDERKRR KEFILERDLL YPDPFEKNLS  360
PEEREVCRHY RVFMRFHSKE EHEELLKSVI EEHRILKRIQ DLQSFFHSIQ IKIIVQEARA  420
AGCRTSAQAE RYIEETRKKE AEETAHKLND SGPADSSLTS AGQANSSFLE GWDISGFLGA  480
DLLSETVVDP SKVDRVYDML VKKGIGQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E7e-36481635120Transcriptional adapter 2
6cw3_G7e-36481635120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336341RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115815.10.0transcriptional adapter ADA2-like isoform X1
RefseqXP_028115816.10.0transcriptional adapter ADA2-like isoform X1
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2R6QEA30.0A0A2R6QEA3_ACTCH; Transcriptional adapter
STRINGGorai.009G328200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24471215
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]