PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn247541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 341aa    MW: 39351.3 Da    PI: 4.5518
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn247541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.2e-35371282102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e++ed+++++++sws+  nsfvv+d ++fa+++Lp+yFkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F  g+k+ll++ik
    Achn247541  37 FLTKTFEMVEDPSTDSMVSWSRARNSFVVWDLNKFATTLLPRYFKHCNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKTIK 124
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
    Achn247541 125 RRRN 128
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3733126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-6033126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-3433126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3037126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-183760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1888100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEGVTVKDEN ITVVSSSSLS PWPQPMERLH EVGPPPFLTK TFEMVEDPST DSMVSWSRAR  60
NSFVVWDLNK FATTLLPRYF KHCNFSSFVR QLNTYGFRKV DPDRWEFANE GFLGGQKHLL  120
KTIKRRRNLP HTAPLQGGSG ACVELGQYGV EEEIERLRRD CNTLMVEIVK LKQQHQSSRD  180
KVIAMEERMR SNERKQQQMM SFLAKALASP SFVQQYMDEY VERKEQRTVE IGRKRRLTMS  240
PSVESFQEQE DLVNIESEME TLFMDPIVTT SGTDIDSVRE TIWEELFRDD IVAGDEGDQT  300
EVDVEVEDLP AKMTPDWGKD LEDLVDQMEF LRSNPDDLFG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-253512618120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028053226.11e-164heat shock factor protein HSF30
SwissprotP411521e-138HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2R6Q3250.0A0A2R6Q325_ACTCH; Heat shock factor protein
STRINGEMJ245101e-145(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-119heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]