PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn238541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARR-B
Protein Properties Length: 627aa    MW: 68566.9 Da    PI: 5.4685
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn238541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.28.7e-09214239127
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekA 27 
                 kpr++W+ eLH++Fv av+qL G++k+
  Achn238541 214 KPRVVWSVELHQQFVVAVNQL-GIDKT 239
                 79*******************.77764 PP
2Response_reg74.44.4e-25361441109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l++  y ev+ +  +e al ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +  Ga 
    Achn238541  36 VLLVDDDPTCLMILEKMLRNCLY-EVTKCNRAEIALSLLRENKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVMNGVTHGAC 130
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l++
    Achn238541 131 DYLIKPVRIEALRN 144
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.7E-4133183No hitNo description
SuperFamilySSF521721.85E-3433158IPR011006CheY-like superfamily
SMARTSM004484.7E-2934146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.99835150IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.5E-2236144IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.69E-2637149No hitNo description
Gene3DG3DSA:1.10.10.602.2E-8213244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MNFGVQGAKS MSMPSSSASW KSGDGVSDHF PVGLRVLLVD DDPTCLMILE KMLRNCLYEV  60
TKCNRAEIAL SLLRENKNGF DIVISDVHMP DMDGFKLLEH VGLEMDLPVI MMSADDSKSV  120
VMNGVTHGAC DYLIKPVRIE ALRNIWQHVV RKRKHEWKDL EQSGSIEDGD RQQKPSEDAD  180
FSSSANEGSW RNSKRRKDEE DQAEERDDSS TLKKPRVVWS VELHQQFVVA VNQLGIDKTP  240
FGSISSLNGL DLQALAATGQ LPAQSLATLE AAALGRSTTK SGISMPFMDQ RNLFSFENPK  300
LRFRDDQQPQ LGNNNKQMNL LHGIPTNMEP KQLANLHQSA QSSFRGMNMQ PNSNHHGNQS  360
SSLLVQMSQP PSRPQMFNDT NSNHFSMIPS SIAQPTLPSG MGSGVLARNG IVENARGAIY  420
NSASQASTMV DFSINQNTDL PGNGFLLANN AGGQMATVAS KGLLQEEVTS EMKGSRGLAP  480
SYDIFSELHQ HKSQDWGLPN VGLTFDASQH SNMRGGLDVP PSVLVQQNNV QNRITPFGKA  540
IFSAAEESGR GNGPNIGQQL DTLLAGNSLR VKAESLPEAS CQNTLFHEQY NQEDLMSALL  600
KQQQEGVGPV TNEFGFDGYA LDNLPV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068255.10.0two-component response regulator ARR2-like
SwissprotQ9ZWJ91e-165ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2R6PW580.0A0A2R6PW58_ACTCH; Two-component response regulator
STRINGXP_008223286.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-164response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]