PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn237931

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bZIP

Protein Properties

Length: 409aa MW: 44788.6 Da PI: 6.9789

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn237931	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.1e-10	212	270	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l+ e+ Achn237931 212 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTNGLTVEN 270 9********************************************99998887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-15	208	272	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.852	210	273	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.2E-9	212	264	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.0E-11	212	263	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.7E-11	212	266	No hit	No description
CDD	cd14703	2.20E-25	213	262	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MEKDKSLNHG GSSLPPSGRH SVFSHHGNSL LPPLGSGGAS ETSHFGHGMS SDSSRFSHDV 60 SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGGLD GPSLSDETEE DLFSMYLDMD 120 KFNSSSATSA FHVGGPSSAA ASASAPTHLA ENVALASSER PRVRHQHSQS LDGSTTIKPE 180 MLMSGSDEAS AADSKKAMSA AKLAELALLD PKRAKRIWAN RQSAARSKER KMRYISELER 240 KVQTLQTEAT SLSAQLTLLQ RDTNGLTVEN SELKLRLQTM EQQVHLQDAL NDALKEEIQH 300 LKILTGQAIP NGGPMMNFPP FGANQPFYPN NQALHTLMAA QQFQQLQIHP QKQQHQFQQH 360 QLHQFQQQQL LHQQQEQHLH QSGDLRMHRP SSGQKENASN GNPSSSKD*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MEKDKSLNHG GSSLPPSGRH SVFSHHGNSL LPPLGSGGAS ETSHFGHGMS SDSSRFSHDV  60
SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGGLD GPSLSDETEE DLFSMYLDMD  120
KFNSSSATSA FHVGGPSSAA ASASAPTHLA ENVALASSER PRVRHQHSQS LDGSTTIKPE  180
MLMSGSDEAS AADSKKAMSA AKLAELALLD PKRAKRIWAN RQSAARSKER KMRYISELER  240
KVQTLQTEAT SLSAQLTLLQ RDTNGLTVEN SELKLRLQTM EQQVHLQDAL NDALKEEIQH  300
LKILTGQAIP NGGPMMNFPP FGANQPFYPN NQALHTLMAA QQFQQLQIHP QKQQHQFQQH  360
QLHQFQQQQL LHQQQEQHLH QSGDLRMHRP SSGQKENASN GNPSSSKD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC771291	0.0	KC771291.1 Camellia sinensis bZIP transcription factor family protein 11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027117495.1	0.0	probable transcription factor PosF21
Refseq	XP_027117496.1	0.0	probable transcription factor PosF21
Refseq	XP_027117497.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-153	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2R6R934	0.0	A0A2R6R934_ACTCH; Transcription factor PosF21 like
STRING	XP_008222595.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3965	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-121	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]