PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn217961

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 273aa MW: 29566.8 Da PI: 6.3747

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn217961	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.3e-11	159	206	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++YI+sLq Achn217961 159 SHSLAERARREKISERMKILQDLVPGC----NKVNGKALVLDEIINYIQSLQ 206 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.2E-17	153	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.81E-10	153	210	No hit	No description
PROSITE profile	PS50888	15.834	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-17	155	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-8	159	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-10	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDPPIINEAS FSAVNPSSYS LAEIWPFPIN GEPGIGGGLG LRMSSLSGFG EAALNRDLSV 60 NESTVTEQQS SGGRKRTYAN SEDESSKLVS TSSGNDLNNS NGKRMKLSPS RDENGGSRSE 120 AEENSGSGNK LAEQSTKSSE PPKQDYIHVR ARRGQATDSH SLAERARREK ISERMKILQD 180 LVPGCNKVNG KALVLDEIIN YIQSLQHQVE FLSMKLEVVN SRVNPHIEGF PSKALGAPTF 240 DAAGMIFGSQ STREYVQGSQ PEWLHMQVGN RL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028084306.1	1e-151	transcription factor bHLH79 isoform X3
Swissprot	Q9LV17	2e-82	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2R6PDZ2	0.0	A0A2R6PDZ2_ACTCH; Transcription factor bHLH79 like
STRING	EOY20293	1e-133	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	5e-84	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]