PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn206911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 27939.1 Da PI: 10.1796 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67 | 1.8e-21 | 83 | 131 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+ s+ qvtfskR++g++KKA ELSvLC+++vav+ +s+ g+++ + Achn206911 83 KKIQKRSQLQVTFSKRKAGLFKKAGELSVLCGVDVAVVAVSPAGNVFAF 131 678999999************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-27 | 75 | 134 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.109 | 75 | 135 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-24 | 76 | 146 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-17 | 77 | 97 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-22 | 84 | 131 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-17 | 97 | 112 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-17 | 112 | 133 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKGSNEKKNQ KLSSDQPNLA TNYPKNTGPR FNCCLKHTLT TFISPCPLSP DLSLSLSLKR 60 NSQAMETSEK KKTTRGRQRI EIKKIQKRSQ LQVTFSKRKA GLFKKAGELS VLCGVDVAVV 120 AVSPAGNVFA FGSPSANAVV NRFLGRNCGK DVGLGGQWKE RYEEVEREIE KAAGGGGFWW 180 GRPVEELGLG ELERYMAALE ELKCKVMGRA DELAVATVAV AVDMETDFAG EFLGFRQRHQ 240 RRIGGSWFCG KLF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061661.1 | 2e-41 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2R6Q210 | 6e-94 | A0A2R6Q210_ACTCH; Agamous-like MADS-box protein | ||||
STRING | XP_002532452.1 | 5e-37 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-24 | AGAMOUS-like 62 |