PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn203151

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Dof

Protein Properties

Length: 328aa MW: 34476.4 Da PI: 8.9499

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn203151	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.9e-39	71	130	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+st tkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkks+ Achn203151 71 EAALKCPRCESTSTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSK 130 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	59	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-32	73	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.227	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MVFSSIPIYV DPHNWPQQEG GGSQNSQFPP HGMPPPAGGG GGSTGTGSGS GSARPGSMAE 60 RARLAKVPLP EAALKCPRCE STSTKFCYFN NYSLTQPRHF CKTCRRYWTR GGALRNVPVG 120 GGCRRNKKSK KSRSKSPAPV ERLLVGSNST STNMISHLLP PPTQLPFCPS LPHLSDYGGS 180 GGIGLNFPGI QPPVAASGGC GTDVEFQIGG GSCGGRSILS ARFGDQWRLQ QLNQFSFLTG 240 MEPPPSGAYP FEGENVNSQA YTGAATGELG SRELDSGVAT VKVEESKGLN LSRNFLGAQG 300 NDQYWDGNNN TWTDLSGFAA SSTSHLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	135	KKSRSKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028095928.1	1e-116	dof zinc finger protein DOF3.6-like
TrEMBL	A0A2R6PL84	0.0	A0A2R6PL84_ACTCH; Dof zinc finger protein like
STRING	Aquca_003_00022.1	1e-106	(Aquilegia coerulea)
STRING	VIT_13s0019g01410.t01	1e-106	(Vitis vinifera)
STRING	XP_010252137.1	1e-106	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	5e-46	OBF-binding protein 3