PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn199501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | AP2 | ||||||||
Protein Properties | Length: 374aa MW: 42149.5 Da PI: 8.0294 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.4 | 3.1e-12 | 229 | 285 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g Achn199501 229 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 285 78*******************433.44554535555.779999**************98 PP | |||||||
2 | AP2 | 24.1 | 8.7e-08 | 328 | 360 | 1 | 36 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 s y+GV++++++grW A+I + +k +lg+f Achn199501 328 SVYRGVTRHHQNGRWQARIGRVAG---NKDLYLGTF 360 78****************988532...5*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.58E-15 | 229 | 295 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-9 | 229 | 285 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.39E-19 | 229 | 295 | No hit | No description |
SMART | SM00380 | 3.1E-23 | 230 | 299 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.425 | 230 | 293 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-13 | 230 | 294 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-5 | 231 | 242 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-5 | 275 | 295 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-5 | 328 | 361 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.012 | 329 | 370 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-5 | 329 | 362 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.9 | 329 | 361 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MSNWLGFSLT PHLRVNNEGL EREEEEEEER GGCFSSNVSS VIPLRSDGWR SYDNTTGENT 60 PKLEDFLGCS YPNSPPNDPK NYCQQEDTFI NLNYPNQDSI NHNPNISTNP SPFIQACPYN 120 SFQTSDLNPN MNHSMYPYHV PFDGASSVSG FKSWLRQTPY LGHEQCHGTH TFQSLSLAMN 180 GHAENCGGPV VAPPLEVADG GRKAVGGKAT TGRESVPRKS IDTFGQRTSQ YRGVTRHRWT 240 GRYEAHLWDN SCRKEGQSRK GRQGGYDKEE KAARAYDLAA LKYWGPTTHI NFPLSTYEKE 300 LEEMKNMTRQ EFVAMLRRKS SGFSRGASVY RGVTRHHQNG RWQARIGRVA GNKDLYLGTF 360 SKDPCPFISD YIH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022777228.1 | 1e-146 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-104 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A2R6PTZ1 | 0.0 | A0A2R6PTZ1_ACTCH; AP2-like ethylene-responsive transcription factor | ||||
STRING | Gorai.012G011800.1 | 1e-144 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-105 | AP2 family protein |
Publications ? help Back to Top | |||
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