PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn199501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 374aa    MW: 42149.5 Da    PI: 8.0294
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn199501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43.1e-12229285155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Achn199501 229 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 285
                 78*******************433.44554535555.779999**************98 PP
2AP224.18.7e-08328360136
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                 s y+GV++++++grW A+I  +     +k  +lg+f
  Achn199501 328 SVYRGVTRHHQNGRWQARIGRVAG---NKDLYLGTF 360
                 78****************988532...5*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-15229295IPR016177DNA-binding domain
PfamPF008472.9E-9229285IPR001471AP2/ERF domain
CDDcd000182.39E-19229295No hitNo description
SMARTSM003803.1E-23230299IPR001471AP2/ERF domain
PROSITE profilePS5103217.425230293IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-13230294IPR001471AP2/ERF domain
PRINTSPR003674.0E-5231242IPR001471AP2/ERF domain
PRINTSPR003674.0E-5275295IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-5328361IPR016177DNA-binding domain
SMARTSM003800.012329370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-5329362IPR001471AP2/ERF domain
PROSITE profilePS510328.9329361IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRVNNEGL EREEEEEEER GGCFSSNVSS VIPLRSDGWR SYDNTTGENT  60
PKLEDFLGCS YPNSPPNDPK NYCQQEDTFI NLNYPNQDSI NHNPNISTNP SPFIQACPYN  120
SFQTSDLNPN MNHSMYPYHV PFDGASSVSG FKSWLRQTPY LGHEQCHGTH TFQSLSLAMN  180
GHAENCGGPV VAPPLEVADG GRKAVGGKAT TGRESVPRKS IDTFGQRTSQ YRGVTRHRWT  240
GRYEAHLWDN SCRKEGQSRK GRQGGYDKEE KAARAYDLAA LKYWGPTTHI NFPLSTYEKE  300
LEEMKNMTRQ EFVAMLRRKS SGFSRGASVY RGVTRHHQNG RWQARIGRVA GNKDLYLGTF  360
SKDPCPFISD YIH*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022777228.11e-146AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-104AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2R6PTZ10.0A0A2R6PTZ1_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGGorai.012G011800.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-105AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]