PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn199081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 429aa    MW: 49285.1 Da    PI: 4.3999
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn199081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.13.5e-16144228286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 Wt+qe+ +L++a  ++  + +r++l+   W+evs+k+ +e + er+ +qC+++++ l+k+ykk+k    + +++++s+++yf++++
  Achn199081 144 WTEQETFVLLDAWGDRFLKRGRKSLRSEEWQEVSEKVtQESKSERTDTQCRNRLDTLKKKYKKEKVKLDE-SKGVTSKWVYFSKMD 228
                 *************************************888999*************************98.599999********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.2E-21143230No hitNo description
PROSITE profilePS500906.423144201IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-4144208IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNLNECYEGK EIESSSYPQQ IGDQYVDDND DEDEEDEEEV DNDDEDDVNE DNGNRQIVKV  60
ENDDDDIVED DDSDDDENEA ENENQQNDYS RRIGDDDLER HQKKRKLKSL LSSYKFAPRV  120
APSQVADASA SKPLFGRRNS LADWTEQETF VLLDAWGDRF LKRGRKSLRS EEWQEVSEKV  180
TQESKSERTD TQCRNRLDTL KKKYKKEKVK LDESKGVTSK WVYFSKMDML MSSSPKQPGL  240
SCGVDSGEYV FMNPKVYLNR SNGLDEIRDS PGNSESAKGE KDDSDGLPPK RLRMGRDRDD  300
GASFRLLADS IEKFSELYEK TENSKRQQML ELEKMRMDFH RELKLHKRQI LERAQAEIAK  360
IRQGNNEEND LSAENKEKQQ MGIKVEPVPG ASVLETLSDC SFQVISEMLS QLHGVVPGVF  420
WVTFSVFA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028110065.11e-161trihelix transcription factor ASIL2-like
RefseqXP_028110066.11e-161trihelix transcription factor ASIL2-like
TrEMBLA0A2R6PSZ10.0A0A2R6PSZ1_ACTCH; Trihelix transcription factor
STRINGcassava4.1_009108m1e-143(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-72Trihelix family protein